Gene Amuc_1296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1296 
Symbol 
ID6274079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1572102 
End bp1572899 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content48% 
IMG OID642613352 
ProductABC transporter related 
Protein accessionYP_001877901 
Protein GI187735789 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAGAT TATCCATACG AAACGTTTCC AAAAGTTATT TTTCCAGAAA AAAATCGCTT 
CTGGCGCTTT CTTCTGCCAA TCTGGACATA GGGGAAGGAG AATTCATCTG CCTGGTAGGT
CCAAGCGGTT GTGGCAAAAC AACTCTGCTG AATATGATCG CCGGTCTGAT CAAATCGGAT
ACGGGAAGCA TTTCCTATGA TGGAGAAATA ATCTCAGGTC CTGGACCGGA CAGGACAGTC
GTTTTTCAGG ATTTCGCCCT GTTCCCGTGG TTAAACGTGC TGCACAATGT AGAATTCGGT
CTCCGATTTA CCGGAATTCC CCGCAGAAAA CGTTGCCAAA TAGCTTTGAA AAACCTGAAA
TCAGTAGGCT TGGACAACTT CACGCAAGCT CGTATCCATG AACTCTCCGG AGGAATGAAA
CAACGCGTAG CCATAGCCCG GGCTCTTGCA TTGCGCCCCA GGGTTCTTCT GATGGATGAG
CCCTTCGCGG CATTGGATGC CATGACCAGG GAACAACTTT ATGCGGATAT CCAGGCCATT
TGTGCCGGAC ATGGGATTAC CGTCGTCTTT GTTACTCATA ATGTACGGGA AGCCGTATGC
CTGGGAGACA GAGTCATTTT ATTTTCCTCC CACCCTGGAC GTATTTGCGG AGAATTCTGC
ATTCGTTTGC CGCGACCGCG CCAAATCAAT GATCCGGGAG TAGCCCGGCT ATCCTCAAAC
ATCACACGTG CATTAAAATT GGTTTCCAGA ACCGCAGAAG AAAAACAAGA CACACAGACA
TCATGCATTC TTCCATAA
 
Protein sequence
MSRLSIRNVS KSYFSRKKSL LALSSANLDI GEGEFICLVG PSGCGKTTLL NMIAGLIKSD 
TGSISYDGEI ISGPGPDRTV VFQDFALFPW LNVLHNVEFG LRFTGIPRRK RCQIALKNLK
SVGLDNFTQA RIHELSGGMK QRVAIARALA LRPRVLLMDE PFAALDAMTR EQLYADIQAI
CAGHGITVVF VTHNVREAVC LGDRVILFSS HPGRICGEFC IRLPRPRQIN DPGVARLSSN
ITRALKLVSR TAEEKQDTQT SCILP