| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1232 |
|---|
| Symbol | |
|---|
| ID | 6275700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1480903 |
|---|
| End bp | 1482393 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642613289 |
|---|
| Product | carbohydrate kinase, YjeF related protein |
|---|
| Protein accession | YP_001877838 |
|---|
| Protein GI | 187735726 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.271029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.25171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT GCTCCACGGA AAATATGCAG ATCGCGGAAC GCGAGCTCAT CGTTAGCGGA
ACACCAGCCA GAACCCTGAT GAAACTGGCC TCTTCCGGTA TTGCGGAATC TCTCATGCAG
TTCTTCCCCG ACCCGGGATT GTGCGTAGCC TATGTGGGCA AAGGGAATAA CGGGGGAGAT
GCTCTCACCG TCCTTAACAT ACTGAAACAA CATGGCTGGG AAATAGGCTT CCGAACCGCT
TACCCGCGCA ACGAATGGAG CGAACTTTCC GTGCGGCAGT TGGCGGAAAT ATCTCCTCCC
CCTCAGGAAT ACCAGGCCCC TCCCCTTCCC CGTACGGGAA AACCTATGAT CCTGCTGGAC
GGCCTGCTAG GAATAGGGGC AAAGGGAATG CTCCGCAGGG AAATCTCCGC TCTCTGTGCG
GAAATGAACT ATATAAGAAA CCGTTGCGGG GCTATACGTA CCGTGGCTAT TGATATCCCC
ACCGGAGTGG ATCCAGATAC GGGAATGCCT CAGCAAAATG CAGTGGAAGC AGATTTCACC
ATGTGCATAG GAGCCGTTAA GCAGGGCCTG CTGGACGATG ACGCCACCCT GTTTGCCGGA
CGCTTAGTCT GCATTGACCT TCCCGGTCTT CACGTACAGG CGCTCCCCGC CACGGAACTT
ATTACCTCCT CACGGCTTAC CAAATTCCTC TCTGCAAGAC CCTATACGGA TTATAAGAAC
AAACGCGGGC ACATTGGCGT CATAGCTGGC TCTGAAGGAA TGCTGGGTGC GGCCCGGCTC
TGCTGTGAAG CAGCTCTCCG GGCAGGAGCC GGTCTGGTTA CACTGCACGT TCACAAAAAC
GTCTATCCCT TAATCGCTCC ATCCATGCCT CCGGAAATCA TGGTCAGACC CGTGGACAGT
TACGCAGATA TCTCCATTCG CACATTCAGT GCTTTCCTCA TTGGCCCAGG TATCGGTTCC
GTATCGGAGG AAGATGCGGA AGCCATCCGC CTCATTCTGG AAACAGGTAC CCCCACTGTT
CTGGATGCGG ACGGGCTGAA TCTGGCCGCG GCCATGCAGT GGAACTTGGG AGAACACGTT
CTGGCTACTC CCCACCATGG AGAAATTCGC AGACTTCTGC CAGATGCAGA CAACTATGCC
ATCCGGGCAG ACATTGCCGA CTGCTTTCTG GCAGAACATG AAGCCGCCCT GGTTTACAAG
GGAGCACGCA CCATCGTCAC CCAACGGGGA AAACCTCTTT TTTATAACAT CACTGGGGAT
CCCGGCATGG CAACTGCCGG TCAGGGAGAC GTGCTGGCAG GTATTTGCGG AGGCTTTATA
AGCCAGGGGG AATCCCTGCT GGTTTCCGCC GTTCTGGGCG TCTACCTGTG TGGCCGAGCT
TCCGAAATGG CAATCTCCGC CGGAGAAGCC ACCCAGCAAA CATTGACGGC AGGGGATACG
CTGCGACATC TGCCTTCCGC CATTCTTTCT ACCGCACGCC TCTGTTATTG A
|
|---|
| Protein sequence | MKVCSTENMQ IAERELIVSG TPARTLMKLA SSGIAESLMQ FFPDPGLCVA YVGKGNNGGD
ALTVLNILKQ HGWEIGFRTA YPRNEWSELS VRQLAEISPP PQEYQAPPLP RTGKPMILLD
GLLGIGAKGM LRREISALCA EMNYIRNRCG AIRTVAIDIP TGVDPDTGMP QQNAVEADFT
MCIGAVKQGL LDDDATLFAG RLVCIDLPGL HVQALPATEL ITSSRLTKFL SARPYTDYKN
KRGHIGVIAG SEGMLGAARL CCEAALRAGA GLVTLHVHKN VYPLIAPSMP PEIMVRPVDS
YADISIRTFS AFLIGPGIGS VSEEDAEAIR LILETGTPTV LDADGLNLAA AMQWNLGEHV
LATPHHGEIR RLLPDADNYA IRADIADCFL AEHEAALVYK GARTIVTQRG KPLFYNITGD
PGMATAGQGD VLAGICGGFI SQGESLLVSA VLGVYLCGRA SEMAISAGEA TQQTLTAGDT
LRHLPSAILS TARLCY
|
|---|
| |