| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1185 |
|---|
| Symbol | |
|---|
| ID | 6273826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1420055 |
|---|
| End bp | 1421650 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642613236 |
|---|
| Product | L,L-diaminopimelate aminotransferase |
|---|
| Protein accession | YP_001877791 |
|---|
| Protein GI | 187735679 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03542] LL-diaminopimelate aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTAG AAGTTCCGGT TTCAAAAGCA GGACTGACGC AGAACGGGGA CGAAGCTTGC
CGGCTTCTTC AGGGCCATGA TGCCCCGCAG AATGAAGAGG TTCCCTTGCT GGGCATCCGC
CTGCCCGTTC TTAGGAATTT TGCCGGGAAG AAGCTCAGGA GAATCTGGCA GGACAGGATG
TCGGCGAGGT GCGTGGACCC TCAAAAGGGC AGGAGCAGCC GCTTTTACAC GGCGGAAACT
GCGGCAGGGG GGGAAGCTGC GCCGTTTCGT GACGCAGGGA AGGACGGCAT GCCGGAACGG
GGCCTTGATT CCGTCCCGTT CCGGGTATGG AATGAGGCGC TTACTATTAA AACCATGCCT
AACATTAACG ATAACTTCCT CAAGTTGCAG GCGGGATATT TGTTCCCGGA AATAGGGCGC
CGCGTGAATG CGTTTGCCGA ATCCCATCCG GAGGCGGCCA AAAGGCTGAT TCGCTGCGGC
ATCGGCGATG TGACGGAGCC GCTTCCCATG GCGGCTATTG AAGCCATGCA CCGGGCCGTG
GATGATTTGT CCACTCATGA ACGTTTTCAC GGCTATGGGC CGGAGCAGGG GTATTTCTGG
CTGAGGGAGG CAATTGCCAA AAAAGCCTAT CAGGCCCACG GCGTGCATGT GGAAGTGGAT
GAGATTTACG TGTCTGACGG AGCCAAATGC GACACGGGAA ACATTCTGGA TATTTTCGGG
CCCGGCAACA GAATCGCCGT GCCGGATCCG GTTTATCCCG TGTATGTGGA TACCAATGTC
ATGGCCGGGA ATACCGGGAG TTCCAGCCCG GATGGTTCTT ATGAAGGGCT GGTGTATCTG
CCGTGCACTC CGGAAAATAA TTTTGTGCCG CAATTGCCTG ATGAGCATGT GGATTTGATT
TACCTGTGCT TCCCGAACAA TCCTACCGGG GCCGTAGCTT CCCGGAATGA ACTGCTGAAA
TGGGTGGAAT ACGCCCGGGC GAACCGTGCC ATTATCCTTT ATGATTCCGC TTATGAGGCT
TTCATACAGG ATTCTTCCAT TCCCAGATCC ATTTTTGAAA TTCCCGGCGC GCGGGATTGC
GCCATTGAGT TCCGTTCCTT CTCCAAGCAA GGAGGCTTTA CAGGGGTGCG CTGCGGTTAT
GTGGTGATTC CCAAGGAATT GCACGGATAT GATTCCGAAG GGAACAAGGT TTCTATCAGC
CGACTCTGGA GCCGCCGCAC CAGCACGAAA TTCAACGGCG CTTCCTATAT TGTCCAGCGG
GGTGCCGCGG CTTTGTTCAC CATGGAGGGC ATGGCCCAGA CTGCCGCGCT CATCAGCCAT
TACCTGGGGA ATGCTTCGCT TCTGCTGAAT GCCTGCCGTC AGGCGGGCAT GCGCGTGTGG
GGCGGGGAAA ACGCCCCTTA TGTATGGGTA CAGTGTCCGG ACGGTCTGGA CAGCTGGCAA
ATGTTTGACA AGATGCTGCA TGAGGCGAAT GTGGTTATTA CGCCTGGTTC CGGTTTTGGT
TCCAGGGGGG AAGGGTTCTT CCGCATTTCC GCGTTTAATT CACGGGAAAA CGTGGATGAA
GTCTGCCGCC GCATCCACAG CCTGTTTGCC AGATAG
|
|---|
| Protein sequence | MSLEVPVSKA GLTQNGDEAC RLLQGHDAPQ NEEVPLLGIR LPVLRNFAGK KLRRIWQDRM
SARCVDPQKG RSSRFYTAET AAGGEAAPFR DAGKDGMPER GLDSVPFRVW NEALTIKTMP
NINDNFLKLQ AGYLFPEIGR RVNAFAESHP EAAKRLIRCG IGDVTEPLPM AAIEAMHRAV
DDLSTHERFH GYGPEQGYFW LREAIAKKAY QAHGVHVEVD EIYVSDGAKC DTGNILDIFG
PGNRIAVPDP VYPVYVDTNV MAGNTGSSSP DGSYEGLVYL PCTPENNFVP QLPDEHVDLI
YLCFPNNPTG AVASRNELLK WVEYARANRA IILYDSAYEA FIQDSSIPRS IFEIPGARDC
AIEFRSFSKQ GGFTGVRCGY VVIPKELHGY DSEGNKVSIS RLWSRRTSTK FNGASYIVQR
GAAALFTMEG MAQTAALISH YLGNASLLLN ACRQAGMRVW GGENAPYVWV QCPDGLDSWQ
MFDKMLHEAN VVITPGSGFG SRGEGFFRIS AFNSRENVDE VCRRIHSLFA R
|
|---|
| |