| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1176 |
|---|
| Symbol | |
|---|
| ID | 6273780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1411344 |
|---|
| End bp | 1412213 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642613227 |
|---|
| Product | domain of unknown function DUF1731 |
|---|
| Protein accession | YP_001877782 |
|---|
| Protein GI | 187735670 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1090] Predicted nucleoside-diphosphate sugar epimerase |
|---|
| TIGRFAM ID | [TIGR01777] conserved hypothetical protein TIGR01777 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAG CCATTACGGG ATCCGGAGGA TTTATAGGGA GTCATTTGTC CAAGCGTCTT
GAGATGTTCG GGCATCGGGT GACGCCCTTG CGGCGCTATC TGTTTGCCCA GGAGGGCGTG
GATTGTCTGG CGCAGGCCCT GGCGGGATGC CATGCCGTCA TCAATCTGGC CGGAGCGCCC
ATCGACCGGC GCTGGACGGA TGCCTACAAG AGGGAGCTGG TGGAGAGCCG CATCATGACC
ACCCGCAAGC TGGTGGAAGC GGTCAACAGG TTGCATGAAC CGCCGGGAGT GATGATTTCC
GCCTCTGCTG TCGGGTACTA TGGCTCGTCC GGCGGCTGTC ATGGGGAACT GGACGATCCG
GAAGCGGATT CCTTTCTGGC GGAATTGTGC GTGGCCTGGG AAAAGGAGGC CGGGCTGGTG
AACAGCTCCG TGCGGCTGGT CCTTACCCGG TTTGGCGTAG TTCTTTCTCC GGATGGAGGG
GCGCTCCCCG AGATGATGCG GCCGGCCCGG TTCGGCGTTA CGGCAACCGC AGGAAATCCG
GATCATCTTT TTTCCTGGGT GGCTTTGGAA GATCTGGCGG ATGCCCTGGT CTTCATTATG
GGCCGGCAGG ATATTTCCGG CCCGGTCAAT GTAACGGCGC CGGAGCTCAC CACCAACCGG
GAATTCTACA GGGCAGCCGC GGAACATTTC CACACCCGTC TGTCCATCCG TGTTCCGGAC
GCCGTTCTGC GGTTGCTGAT GGGAGAAGCT TCCCAGGTGA TTACCGGCGG CCAGTGCGCC
GTTCCGGAGA CGCTGATGAG GGAAGGGTTT ACATTCCAAT ATCCGGATAT CCGCACTTTT
TTTAACAAAG CATTTTCTGT CAAATCATGA
|
|---|
| Protein sequence | MNVAITGSGG FIGSHLSKRL EMFGHRVTPL RRYLFAQEGV DCLAQALAGC HAVINLAGAP
IDRRWTDAYK RELVESRIMT TRKLVEAVNR LHEPPGVMIS ASAVGYYGSS GGCHGELDDP
EADSFLAELC VAWEKEAGLV NSSVRLVLTR FGVVLSPDGG ALPEMMRPAR FGVTATAGNP
DHLFSWVALE DLADALVFIM GRQDISGPVN VTAPELTTNR EFYRAAAEHF HTRLSIRVPD
AVLRLLMGEA SQVITGGQCA VPETLMREGF TFQYPDIRTF FNKAFSVKS
|
|---|
| |