| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1171 |
|---|
| Symbol | |
|---|
| ID | 6273790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1406676 |
|---|
| End bp | 1407860 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613222 |
|---|
| Product | protein of unknown function DUF418 |
|---|
| Protein accession | YP_001877777 |
|---|
| Protein GI | 187735665 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2311] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCG TATATCCCCC CGGCAACGAA CGCATTTACG TGGTGGACGC TCTGCGCGGC
TTTGCCGTAA TGGCGATCAT GCTGCTGCAT TTTCTTGAAC ATTTCATCTA TAATTCCTAT
CCCGTGGCTT CTTCCCCAAT GATGGAAGCG GCCAACCAGC AGTTCAAGGA GGTCTTTTTT
TTCCTGTTTG CCGGCAAGTC CTACACCATT TTCGCCCTTC TGTTCGGATT CACTTTTGCG
GTCCAGTACC GTAACCAGGC CCGGAAGGGA AGGGATTTTG CGGGCAGGTT TGTCTGGCGC
ATGTGCCTGC TGGCGGTGTT CGCCTGCATG AATGCAGCGT TTTTCCCGGG CGGTGATGTT
CTGCTGACTT TTTCACTTGC AGGTTTGTTG CTGGTGCCGT GCCGCCGGTT GAAGACATCC
TCGCTGGTGG CTTTGTCCCT GTTTTTCCTG GCCCAGCCGC TGGAGTGGGC CTATGCGGCG
GTGCAGTGGA TGCATCCGGG TTGGGTTCCT CCCTCCCTGT CTGTTGCGGA ATCGTACGCT
TCCTTAAAAT CCGCCGTGGA TACGGGAAAT TTCTGGGTGA TGGCCTGGGA GAACCTGACT
ACAGGACAAT GGGCCAGCCT GGCATGGGGT ATTGAAGCCG GGCGTTTGAT GCAGGCTCCG
GGTCTGTTCC TGCTGGGGTT TGTTCTGGGG CGCCAGGATT TCTTTTTGCA GAATGACGGA
ACGGCTGTGT TCTGGACCCG CGGACTGCTA TTTTCCCTGG CCGGGGCCTG TGCATTTTAC
GTGGTGATGT GCCTGCCGGG GCTGCCGGGG CCTGTGCATA CCGTGTTTAG CATGTGGCAC
AATGTTTGCT TTACCGGCGT ATGGGTGGCC GGGTTCGTTC TGTTGTACCG GCTGGAATAT
TTCAGGAAAG CGACGGCTCC GTTGCTGACC TACGGGCGCA TGAGCCTGAC CAACTATGTT
TCCCAGTCCG TGATCGGCTC CCTGATTTTT TTCCCGTATG CACTGGGGCT AGCTCCCTAC
TGCGGGTATC TGGCCAGTTT TGTGGTCGGC TTTGCCGCCA TGACCGGACA GATATGGTTC
TGCCGCTGGT GGCTGGAGCG GCACCGCTAC GGGGTGCTGG AAGGATTGTG GCACCGGGCG
ACATGGCTGG CCGCCGGGAA GGTTTCCGCT CCGGAACACC GGTAA
|
|---|
| Protein sequence | MPSVYPPGNE RIYVVDALRG FAVMAIMLLH FLEHFIYNSY PVASSPMMEA ANQQFKEVFF
FLFAGKSYTI FALLFGFTFA VQYRNQARKG RDFAGRFVWR MCLLAVFACM NAAFFPGGDV
LLTFSLAGLL LVPCRRLKTS SLVALSLFFL AQPLEWAYAA VQWMHPGWVP PSLSVAESYA
SLKSAVDTGN FWVMAWENLT TGQWASLAWG IEAGRLMQAP GLFLLGFVLG RQDFFLQNDG
TAVFWTRGLL FSLAGACAFY VVMCLPGLPG PVHTVFSMWH NVCFTGVWVA GFVLLYRLEY
FRKATAPLLT YGRMSLTNYV SQSVIGSLIF FPYALGLAPY CGYLASFVVG FAAMTGQIWF
CRWWLERHRY GVLEGLWHRA TWLAAGKVSA PEHR
|
|---|
| |