| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0892 |
|---|
| Symbol | |
|---|
| ID | 6274275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1063785 |
|---|
| End bp | 1066232 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642612947 |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_001877506 |
|---|
| Protein GI | 187735394 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat
[TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGATAG GAGATAACGC CCTGTTCCGG GGAAATTGGC ACGGCGCTAT TCCTATCGAG
CAGAATTATA ACGGAGGTGC GATTTGGAGT AGGGGGGGAA ATATCATCAT AGGAAATCAT
GCGGAATTCG ACGGGAATTA TGTTTTCTCT GATAGGCAGG CTTGCCAAGG TGGAGTATTT
TATGATGACT TTTTTGGCGG TGCGATAACT GTAGGAGCGG ATGCCGTTTT TACCGGTAAC
TTTGTTTTCA GTACCAACTA CTCTGCTGCT GGGGGCGCGA TGTTTGTCAG AAAGGATGGA
CAGAAATATG CGGCAGAAAC AGGGGCAATA ACCATAGGAC CCAACCCCAG TTTCATCAAA
AATTTTGCTT ACTCCGGAAG TGCTGATGCT TATGGCGGTG TGATTTACAG CGATGGGGAT
ATTTCTTTCA GCGATGGAGC TACGTTTATC AACAATTATG CCAAGACTTC CGGGGGAGCC
ATCACGATGG GAGGGAAATG CGACCTGCTC GCTCTGACGA AGGACGTGCT TTTCAGCGGC
AACATGGCTG GGGGCGTCGT CATCGGCCAG TCCGACGATG GCTTCCCCGT GGTGGAAAAC
GGCATTGCGA ATGCCATTGA CATGAACGGT TCTTTGTTTT CTTCACTTTA TACGCCCAAT
CTGACGCTTG CCGCGGAAGA GAGGCGTGAA ATCCGTTTCA ACGACCCGAT TACCAGCCGG
AACGAAGACC CCGGCCGCCC TATGACCCTC ACGCTCAACC GCTACACGGA CGGGGAGGGG
AATGTTCGCG ACACGGATGG AACGATCGTC TTCAGCGGCG AACTCTACCA GGGAGAAGAT
ACGCATCTTG CCGCCAGCCG GTACAACAGC TTCCTCGCGG ATGCCACCCT CTATGGCGGC
GCCCTCCTGC TGGAACACGA TGTTGTCTTC GGCAGGAATC CTGAGGAAAT AACGGATAAA
CGATACAACT CCTCCCTGAC GGTGGAAAAA GGCGTGCTGG AAATCACCGG AGGAAGCAAG
GCCAACGCCT CCAGCTTCAC CCTCTCCGGC CCTGGCGCCG TCCTGCGCCC CGGGGAGAGC
GCCTTCATCA ACACCCACAA CGCCGACCTT TCCCACGGCT TCACCTTCGA TATGCGCCAC
CAGCTCCAGG CCGGGCCGGT CTTCGGCCCG GGCCTGATGC TCTCCGCCCT GGACTCCTTT
ACGGCCGGGG GGTACATCGG CGTGGCGGAC ACGGGAGCCA ACGCCCCCCG GTTCTACGCG
GACCGCTCCT GGAAGCAGGA CCGCGTCTTC CACGTGCTGA CGGATGTGCA GCACATCCAT
GAGGGGGACT TTGACGGGGC CGTCTCCCAG GCCACCGGAA CGGCCCGGGT GGATGACCCC
TACGCCTACA CGGGAACCTG GAGCCACCGG TGGACGGACG CGGACGGCGA CGGCTACGCC
GAACAGCTCC AGCTGGTCTG GAAAGCGGAC GGAACCCCCA TCAGCCGCGT TGACCCGGAA
CTGGCCGGGG AACTGGCCGT CAACTCCCTC TGGAGCTCGG CGTCCAACGC GGCGGCCTTG
GGCGGCAACG TCCTCTCCCG TCTGAGCGTG CCGCGCCTGG CCGACAGGCA TGCCCGCAAC
CTGTGGGGCA TGGGGCTGGG CGACTTCGCC CGGCAGCGCA GCCGGGGAGG CGTGGACGGC
TACGACTACA ACGGAGGCGG CTACTCCGTG GGGGCGGACA GCGGCATGGG AGGGGAGGAC
GAGGGCATCT GGGGGATCGC CTTCGGGCAG CTCTGCGGCC ATGCCAGAAG CCGGGACTTC
CAGGGGCGCA ACACGCAGGA CACCCGGATG GGCTCCCTGT ACTGGGGCCG CCTGATGGAA
GAAAGCAACA GGGCGTACTG GATCTTCAAG GGAAGCCTCA CGTGGGCGGA AACGCGCAAC
AACATGACCA GCCGCCTGAG CGGGGCGCCG GCCTCCAGGG GCAAATGGAA CAACGAGACG
TGGCTGGCGC AGGCGGAAGT GTCCCGGACG GCGGACTGTG CGGGAGGGTG GAGGCTGACG
CCGTTCGTGA GGATGGAATT CACGCACGGC CGTCAGGACG CCTTCCGGGA ACAGGGAGGG
TATGGCCGTG ACTTCGGAGG GGCGGCGCTG AAACGCCTGT CCATTCCCGT GGGCCTGGAA
ATAGGCAGGA CGGACGAATG GAAGGGGAGG CCGTGGGCGC AGTCGCTGCG CGTGTCCTAT
GTGGGGGACG TGCTGAGGGA CGTGCCGGAA GCGGCGGTGT ACAGCCCGTA CAGCGACATG
GGCTGGAGAG GAAGGGCGGT GAGCCCGGAA CGGCACGGCC TGCGCGCGGA GTACAACACG
TTCCTGCAGT GCAATGAGCG CTGGAGCGTG TACGGGGGCT ACGGGCTGGA AGTGAGGGGA
AGCTCCTGCT ACCACCGCGT GAACGCAGGG GTGTCCAGGA GCTTCTAA
|
|---|
| Protein sequence | MVIGDNALFR GNWHGAIPIE QNYNGGAIWS RGGNIIIGNH AEFDGNYVFS DRQACQGGVF
YDDFFGGAIT VGADAVFTGN FVFSTNYSAA GGAMFVRKDG QKYAAETGAI TIGPNPSFIK
NFAYSGSADA YGGVIYSDGD ISFSDGATFI NNYAKTSGGA ITMGGKCDLL ALTKDVLFSG
NMAGGVVIGQ SDDGFPVVEN GIANAIDMNG SLFSSLYTPN LTLAAEERRE IRFNDPITSR
NEDPGRPMTL TLNRYTDGEG NVRDTDGTIV FSGELYQGED THLAASRYNS FLADATLYGG
ALLLEHDVVF GRNPEEITDK RYNSSLTVEK GVLEITGGSK ANASSFTLSG PGAVLRPGES
AFINTHNADL SHGFTFDMRH QLQAGPVFGP GLMLSALDSF TAGGYIGVAD TGANAPRFYA
DRSWKQDRVF HVLTDVQHIH EGDFDGAVSQ ATGTARVDDP YAYTGTWSHR WTDADGDGYA
EQLQLVWKAD GTPISRVDPE LAGELAVNSL WSSASNAAAL GGNVLSRLSV PRLADRHARN
LWGMGLGDFA RQRSRGGVDG YDYNGGGYSV GADSGMGGED EGIWGIAFGQ LCGHARSRDF
QGRNTQDTRM GSLYWGRLME ESNRAYWIFK GSLTWAETRN NMTSRLSGAP ASRGKWNNET
WLAQAEVSRT ADCAGGWRLT PFVRMEFTHG RQDAFREQGG YGRDFGGAAL KRLSIPVGLE
IGRTDEWKGR PWAQSLRVSY VGDVLRDVPE AAVYSPYSDM GWRGRAVSPE RHGLRAEYNT
FLQCNERWSV YGGYGLEVRG SSCYHRVNAG VSRSF
|
|---|
| |