| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0889 |
|---|
| Symbol | |
|---|
| ID | 6274278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1058478 |
|---|
| End bp | 1059632 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642612944 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001877503 |
|---|
| Protein GI | 187735391 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000756331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA TTAATCTTTT ATTCTGCATG CCCCTGCTGG TGGTTTGCTT CTCCTGCCAG
CGGGAGGGTG AAAGCCAGGC AGCCGGATTG CCCGGCGAAA CCGTGCCGGA AGTGTCTGTC
ATGACGGTAC GCAGTACTCA GGTTCCCGTA ACCGCCAATC TTCCCGGCCG TATGGAAGCG
TATCTCCAGG CGGAAGTGCG CGCCCGCGTG ACGGGAATTA TTCAGGAACG CTGCTATCAG
GAAGGGCAGA CGGTCCGGCC GGGCGATCTT CTTTTTAAAA TAGACCCGGC TCCGCTTCAG
GCTGTCCTGG ATGAATGCAA GGCTGCAGTG GCTCGTGCCA GGGCCGTTCT GTCGGATGCG
GAGGACAAGG CCGCCCGGTA TTCCTCCCTG GTCGCCAAGG GCGCCGTCAG CATACGTGAG
CATAAACAGG CCAGGGCGGA GGAAGAGCGG GCCAGGGCGG AATATGCCGC CGCGGCCGCC
TCTCTGGAGC AGGCGCGCCT GAATCTGGAA TATACCCGAG TGGAGGCGCC CATCTCCGGC
CGCGTGCGCC GTGCCCTGGT GACGGAAGGG GCGTTTGCCA ACCAGAATGA ATTCACCCAC
CTGACCACCA TTGAACAGAT TGACCCCATT TATGTCCGCT TCAGCCAGCC GGCCTCCCAG
TACAGCAGCC TGCGCCGCGC CGTCGTATCC GGATTGTGGA AGGGAGTGCC GCTGGGCGAA
ATCAAGGTGC GCCTGCTGCT CTCCAATGGG GAGGAATACC CCCATTCCGG CAGGATCATT
TTTTCCGACA TGGCGGTGGA CCCGAATACG GATACTATTG AAATGCGGGC CCTGTTCCCC
AACCCGGACC AAGAACTGCT GCCCGGCGCC TATGTGCGCG TGGTGTTTGA CAGGGCGGTG
CGGGACAACG TATTCGCCAT TCCCCGGGAT GCCGTCATCC GCACCGCGCA GGGAGCTTCC
GTCTTTGTCG TGGGCCCGGA AGGCGTGCTG GAAGCGCGCC CCGTCAGGGC GGATACGCTG
AACGGCCGGG AATGGCTGGT TTCAGAAGGC CTCCGGGATG GGGACAGGGT TGCCGTCAGC
CACACGATGT CCCTCCGCCC CGGCATGAAA GTCCGCAGTG CCGCCGCCCG GCCGCAACCC
CATGCCCAGC AATAA
|
|---|
| Protein sequence | MKIINLLFCM PLLVVCFSCQ REGESQAAGL PGETVPEVSV MTVRSTQVPV TANLPGRMEA
YLQAEVRARV TGIIQERCYQ EGQTVRPGDL LFKIDPAPLQ AVLDECKAAV ARARAVLSDA
EDKAARYSSL VAKGAVSIRE HKQARAEEER ARAEYAAAAA SLEQARLNLE YTRVEAPISG
RVRRALVTEG AFANQNEFTH LTTIEQIDPI YVRFSQPASQ YSSLRRAVVS GLWKGVPLGE
IKVRLLLSNG EEYPHSGRII FSDMAVDPNT DTIEMRALFP NPDQELLPGA YVRVVFDRAV
RDNVFAIPRD AVIRTAQGAS VFVVGPEGVL EARPVRADTL NGREWLVSEG LRDGDRVAVS
HTMSLRPGMK VRSAAARPQP HAQQ
|
|---|
| |