| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0816 |
|---|
| Symbol | |
|---|
| ID | 6274361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 961035 |
|---|
| End bp | 962135 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642612866 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_001877430 |
|---|
| Protein GI | 187735318 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.731986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.187979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA CCATTTCCAA GCAAGTATTT CTCGACGGGC TGAGACAGGT TGCCAGCGTT
GTGTCTTCCA AGACGACGCT GCCCATTCTT TCCAACGTCA AGATTGAAGC TGAAAACGGC
CAGGTACGTT TTACGGCTAC TGATCTTGAT GTATGTATTA CTGGCGTGGT TCCCGCAAAT
GTGCTGCGTG AAGGCACCGT GACCCTGCCC GCTAAAAAGC TGGTGAGCAT TATCAGCGAA
CTTCCTGAAG CCGAAGTCCA GGTGGATGTC AACCAACGCA ACCAGGCTGC TGTGGAATGT
GGCCGCTCTC AGTTTAAACT GAACGGCCTT CCGGCGGATG AATTTCCGGA ACTGCCGTCT
TTTGAGCAGG CTACTGTGTA CCAGGTGGAG CAGAATATGT TGCGCGACTG TATCCGCCGG
ACGGAATATG CCATTTCCAC GGATACGACC CGCTACGTGT TGAACGGCAT TTCCCTTTCT
TTCCGCAATG GTAAAATGAC TTTGGTAGCC ACGGACGGAC GTCGTTTGGC TTTGGCGGAA
ACCGCCCTGG AATTTCCGGA AGAACAGCAA CTGGATGCCA TCCTGCCCAC TAAGGCTGTC
GGAGAACTCC GCCGCCTTCT GGATGAAGTG GGAACCGTCA CGATCCGGTT CACACGCAAC
CAGGCAGCCT TTGAAATCAA CGATACGCTC TTAATCAGCA AACTGATTGA CGGCAATTAC
CCGAACTACC GGCAGGTAAT TCCTACGGAT TGCAAGGAAA GTATCGAACT TCCCTGCGGG
GAACTGCTGG AGACAGTGCG CCGTGTTTCT CTCCTTTCCG TGGATAAGAG CACAAATATC
AAGCTGAATT TTCGTGAAAA CGAACTGGAA GTGGCTTCCA GCGCAGAAGG AGTGGGCGAA
GCTCATGAAT CGATGACGAT CACTTATTCC GGAAGGCCGC TTTCCATTTC CTTTAATCCG
GATTTCTTCA TGGCTCCCCT GAAGACGATG GCCGGGGATA CGGTCATTAC GCTGAACCTC
ATTGATGAAA TGAGTCCGGG CGTCTTGAAG ATTGGCGATG AGTTCCTGTA TGTGCTCATG
CCGATGAGAT CTCCCAATTG A
|
|---|
| Protein sequence | MKFTISKQVF LDGLRQVASV VSSKTTLPIL SNVKIEAENG QVRFTATDLD VCITGVVPAN
VLREGTVTLP AKKLVSIISE LPEAEVQVDV NQRNQAAVEC GRSQFKLNGL PADEFPELPS
FEQATVYQVE QNMLRDCIRR TEYAISTDTT RYVLNGISLS FRNGKMTLVA TDGRRLALAE
TALEFPEEQQ LDAILPTKAV GELRRLLDEV GTVTIRFTRN QAAFEINDTL LISKLIDGNY
PNYRQVIPTD CKESIELPCG ELLETVRRVS LLSVDKSTNI KLNFRENELE VASSAEGVGE
AHESMTITYS GRPLSISFNP DFFMAPLKTM AGDTVITLNL IDEMSPGVLK IGDEFLYVLM
PMRSPN
|
|---|
| |