| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0785 |
|---|
| Symbol | |
|---|
| ID | 6274397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 921168 |
|---|
| End bp | 922277 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642612836 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_001877400 |
|---|
| Protein GI | 187735288 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.537709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC ATCACCATCA TATTGCTGTC TTGGCCGGCG ACGGTATCGG TCCCGAGGTC
ATGGCACAGG CTCTGAAGGT TCTGGATGCC GTAAGCGGCA AGTTTGGCTT TACCGTAAGC
CGCAAGGAGG CATTTGTAGG GGGTGCGGGC ATTGACCACT GCGGCAAGGC TCTTCCCGAA
GAAACCATTC GCGCCTGCGA AGAGGCGGAC GCCGTTCTGT TCGGCTCCGT GGGCGGTCCC
AAATGGGAGC ATCTCCCCGC CAATGAACAA CCGGAACGCG GAGCCCTGCT GCCTCTGAGA
AAACATTTCG GCTTGTATGC CAACCTGCGT CCGGGCGTAT GCCTTCCGGC CTTGACCCAT
GCCTCCCCCA TCAAGAATGA ACTGATTGAA GGCGGATTCG ATATTTTATG TGTCCGGGAA
TTGACTGGCG GCCTGTATTT CGGCCAGCCC CGTTTCCGCG AACGGGAGGG AGACGACGAA
GTCGTCGTGG ATACCATGCG CTACCATAAA AGCGAGATGG TGCGTATCGC CAAAGTGGCG
TTCGAGGCTG CGCGCGGCCG CCGTAAGCGC GTCACCAGCG TGGACAAGGC CAATGTGCTG
ACCAATTCCC TGCTGTGGCG CGAGACAATG ATTGAAGTTT CCAAGGATTA TCCCGACGTG
GAATTGCTGC ATATGTACGT GGACAATGCA GCCATGCAGC TGGTGCGCAA TCCCCGCCAG
TTCGACGTGC TGGTGACGGA AAACCTGTTC GGGGACATTC TTTCCGATGA AATGGCCATG
ATTTGCGGCT CCCTGGGCAT GCTGCCCAGC GCCAGCCTGT GCCAAGGCGC GCAGGACAAC
GGCCTGTTCT TCGGCCTTTA CGAACCCTCC GGAGGCTCCG CCCCGGATAT TGCCGGCAAG
GGCATTGCAA ACCCAATCGC CCAGATTCTT TCCCTTTCCA TGCTGTTGCG CTACTCCCTG
GGAGAAAAAA CAGCGGCAGA CGCCATTGAC TCCGCCGTTC GCCGCGTGAT TGACCAGGGC
TGCCGCACGG GCGACCTGGC TACGGGAGCT CCCGGAGAAA TCCGCGTGAA TACGGCGGAA
ATGGGTGACG CCATCATCGC CGCCCTGTAA
|
|---|
| Protein sequence | MSEHHHHIAV LAGDGIGPEV MAQALKVLDA VSGKFGFTVS RKEAFVGGAG IDHCGKALPE
ETIRACEEAD AVLFGSVGGP KWEHLPANEQ PERGALLPLR KHFGLYANLR PGVCLPALTH
ASPIKNELIE GGFDILCVRE LTGGLYFGQP RFREREGDDE VVVDTMRYHK SEMVRIAKVA
FEAARGRRKR VTSVDKANVL TNSLLWRETM IEVSKDYPDV ELLHMYVDNA AMQLVRNPRQ
FDVLVTENLF GDILSDEMAM ICGSLGMLPS ASLCQGAQDN GLFFGLYEPS GGSAPDIAGK
GIANPIAQIL SLSMLLRYSL GEKTAADAID SAVRRVIDQG CRTGDLATGA PGEIRVNTAE
MGDAIIAAL
|
|---|
| |