| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0724 |
|---|
| Symbol | |
|---|
| ID | 6273807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 855308 |
|---|
| End bp | 856180 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642612776 |
|---|
| Product | Glucan endo-1,3-beta-D-glucosidase |
|---|
| Protein accession | YP_001877342 |
|---|
| Protein GI | 187735230 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.337879 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAA AGGGAGAAGA TTCCAAACCT CCGAGGACCC TCCCCGGCGG GTGGGTTTAT
GTCTGGGGTG ACGAGTTCAA CGGTTCCAGG ATAGACGCCA AAAAGTGGAA ACCGGAGTTG
GGAGTAATCC GTAACCAGGG CTCCCAGCAG ACTTATACAG GCCGACCCAA GAATATGAGA
TTGGAGGATG GCTGCCTGGT TTTGGAAACC CATTTTGAAA AGTTCGCCAA TGTCAATTAT
AAGAAAAGTT CCGCGGATTG GATCAAGAAT ACCAAGTTCA TGCCCTATAC CTCCGGTTCC
GTTACGACGA TCAAAACAAA AAATTTCATG TTCGGCAGAC TGGAAGTGCG TGCCAAGGTT
CCCAAAACCA AGGGCATCTG GCCTGCCATC TGGTTGCTTG GCAAGAATAA ATGGGGCTGG
CCCGTCAACG GGGAGATTGA TATGCTGGAG AATATTTCCC AACAGCCGGA TGTGGTTTAT
TCCACTTTCC ACTTGAGTCC GGACGGCGTG TCCACAAGGG ACGCTTCCCG CGGAGGGACT
GTGAAGATAG AGAATCTTTC CGATGATTTT CATACCTATG TCATGGAATG GGACAAGGAT
TCCATCAAGT TGATGGTGGA TGACAAGCTG GTGAAGTCCA TTGACCTTAA TACCACTAAT
TATGCCAATG GGGCGGGGAA TCCGTTCCGT ACGCCGTTCT ATCTCATTCT CAATTCCGCC
GTGGGCGGCA CCTGGTGCGA GAAAGCTCCT AAAGACGGGC AAGGGTATCC TGTAAAATTC
CTGATTGATT ACGTTCGGTT CTATCAGACG AAAGAACATG CCCAGCAGGC TAAGCAGTTT
GACCCGGAAA CCGGCCTGCC CAAGAAGAAA TAG
|
|---|
| Protein sequence | MSVKGEDSKP PRTLPGGWVY VWGDEFNGSR IDAKKWKPEL GVIRNQGSQQ TYTGRPKNMR
LEDGCLVLET HFEKFANVNY KKSSADWIKN TKFMPYTSGS VTTIKTKNFM FGRLEVRAKV
PKTKGIWPAI WLLGKNKWGW PVNGEIDMLE NISQQPDVVY STFHLSPDGV STRDASRGGT
VKIENLSDDF HTYVMEWDKD SIKLMVDDKL VKSIDLNTTN YANGAGNPFR TPFYLILNSA
VGGTWCEKAP KDGQGYPVKF LIDYVRFYQT KEHAQQAKQF DPETGLPKKK
|
|---|
| |