| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0623 |
|---|
| Symbol | |
|---|
| ID | 6274203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 731325 |
|---|
| End bp | 732635 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642612674 |
|---|
| Product | glycosyl hydrolase BNR repeat-containing protein |
|---|
| Protein accession | YP_001877241 |
|---|
| Protein GI | 187735129 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.815723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGC ACCTATCATC CCTGGCAGCG TTGCTCCTGG CATCATACCT TCCGGCGCAG
GCCACCGTAC CGGCCCATTC CCCTTCCACA GCGTTCATCC GGAGCGGCCT CCCGATCGTT
GATCTGGATC AATGGACAGA AGCCCAGGTA GTAGTCGACA AGGAAAAAGG AAAATACCTG
GGACATCCAA CGACGCTATT GCTGAAAGAC GGAAAAACCA TTCTGTGCGT TTATCCTAAA
GGGCACGGCT CCGGGGAAAT CATCCTGAAG AAATCCACGG ACGGAGGCAA AACATGGAGC
GAAAGGCTGC CGGTTCCAGA ATCATGGAAA ACCAGCAGGG AAGTACCCAC ACTATATGAA
ACGGAAGACT CCCGGGGCAA GCGCCGCATT CTGCTTTTCA GCGGCATTCA GGGGGGAAAC
AGAAACACAG CCCCCAGAAA CCGGATGGCG GTCAGTGAAG ACAACGGAAC AACATGGTCC
GAGCTGACCC CCATTCCCAA CCAGGTCGGA GGCATTGTTG TCATGAGTGA CCTGATTCCT
CTAAAAACGG GAAAAGGGCA TTATATGGCC TCCTACCATG CCAATGCCCG GGGCAAAGAC
GGACATGGAG AGTTTCACAC CATTGAACAA TATGTCACCT TTACGGAAGA CGGTGGGCTG
ACCTGGACCT CCCCCCAGGT CATTTTCCCA GGGACAAGGG ACATGCACCT GTGTGAGGGA
GGTTTTGTCC GCAGCCCGGA CGGAAAAACA ATCGCGCTGC TGTTACGGGA AAACAGCAGG
CACCATAACT CCCAGATCAT GTTTTCCGAA GATGAAGGTA AAACATGGAC TCCCCCCAAA
GAACTGCCGG CAGCCCTGTG CGGAGACCGC CACCAGATTC TTCCCCTGCC TGACGGAAGG
CTTCTGGTTC AATTCAGGGA TGCTCCCCCG ACCAGGAAGA AAGGGCAGGC CGCCAGCCCG
ACGGAAGGAG ACTGGGTAGC ATGGATAGGC CGGTGGGAAG ACCTGAAAAA CGGCACGGAA
GGCTCATATA AAATCCGTTT TAAGGACAAC CGCAACGGTT GGGACTGCGC CTACCCGGCC
GCCGAACTAT TGCCGGACCA TACCCTGGTA TGCACTACCT ACGGACACTT TGACAAAGGG
GAATTGCCAT ACATCCTCTC CGTCAGATTT AAAATCAGCG ATACGGACAA GATGGTCAAA
CAATATGCGG GGAACAATCA CCCCAAGATC AAAAATGACA CAGGAGCGGG AGAAACCGTT
TTTGACCCCA ATGAGCCGGA CTCCGTTAAT CGCCTTCTGA AACGTCCCTG A
|
|---|
| Protein sequence | MNLHLSSLAA LLLASYLPAQ ATVPAHSPST AFIRSGLPIV DLDQWTEAQV VVDKEKGKYL
GHPTTLLLKD GKTILCVYPK GHGSGEIILK KSTDGGKTWS ERLPVPESWK TSREVPTLYE
TEDSRGKRRI LLFSGIQGGN RNTAPRNRMA VSEDNGTTWS ELTPIPNQVG GIVVMSDLIP
LKTGKGHYMA SYHANARGKD GHGEFHTIEQ YVTFTEDGGL TWTSPQVIFP GTRDMHLCEG
GFVRSPDGKT IALLLRENSR HHNSQIMFSE DEGKTWTPPK ELPAALCGDR HQILPLPDGR
LLVQFRDAPP TRKKGQAASP TEGDWVAWIG RWEDLKNGTE GSYKIRFKDN RNGWDCAYPA
AELLPDHTLV CTTYGHFDKG ELPYILSVRF KISDTDKMVK QYAGNNHPKI KNDTGAGETV
FDPNEPDSVN RLLKRP
|
|---|
| |