| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0573 |
|---|
| Symbol | |
|---|
| ID | 6274572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 670610 |
|---|
| End bp | 671668 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642612623 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_001877191 |
|---|
| Protein GI | 187735079 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGCG AGAAAGAGGA ATTACTGGAA TGGCGCAAAC GCGCCGCCGC ACAGCCCGCG
GGACGGGTAG TCCTGGATCT GGAGGCAGAC AGCCTGCACC GCTATCAGGA AAAAATCTGC
CTGATCCAAT ATGCGGACGA AACGGGTTCC TGCCTGATTG ACCCTCTCTC TATCGAAGAT
ATGGGGCCTT TCTACAACTG GCTGAAAGAA ACGGAAGTCT GGATGCACGG AGCGGACTAC
GATATGAGCC TCTTTCAAAA CGCCTGGGAA ACGCTGCCCG CCATGATCTG GGATACGCAG
ACGGCGGCGC GCCTGCTGGG CTTCCGCCAG TTCGGGCTGG CAGCCCTGGT GGAACACTTC
CACGGCATCA CCCTGAGCAA ATCTTCCCAA AAGGCGGACT GGGCGCGGCG CCCCCTTTCC
CCAACCATGG TCACTTACGC CCTGAACGAC GTAAATTACA TGCTGGACAT GGCGGACAAA
CTGACGGCCG CCCTCCGGAA AAAAGGACGC ATGGGCTGGT TTGAAGAAAT TTGCAGACAT
TCCATGGAAC GCGCCCGGGA ACGCCATCTG GCAGGCCATC AGGACCCCTG GCGCATCCAG
GGCTGCGGCA AATTGAACAG GAAGGGGCTG GCCGCCCTCC GGGAAATGTG GACCTGGCGT
GATGCGGAAG CCAAAACGTG GGACAAACCC GCGTTCATGG TTTGCTCCAA TGCTGACCTC
ATCCAGTGGA GCGTGGCTCT CCAGGAACAG CGCACCGTGG CGCCCCCGCC CCGTTTTCAT
GCCCACAGGC GCAGCCGGTT CATGAATGCG CTCCAGAAAT TCTACCTGCT GGATGAAGAA
GACTACCCAT GCCGGCCCCG CATTCAGCGC CGGCAACATT CCGACCAATT TGAGGACAAT
CTGGCCCGCC TGTGCAAACT CAGGGATGAA AAAGCTGAAG AACTGGGCAT GGAAGGCTCC
TTCCTGATTA CCCGGGCCTC TCTGGAAGCT ATTGCGGAAG ACAGGGAAAA AGGCGTTTCC
ACCCTGTTGA ACTGGCAGAA GGAAGCCCTG GGTTTTTAA
|
|---|
| Protein sequence | MISEKEELLE WRKRAAAQPA GRVVLDLEAD SLHRYQEKIC LIQYADETGS CLIDPLSIED
MGPFYNWLKE TEVWMHGADY DMSLFQNAWE TLPAMIWDTQ TAARLLGFRQ FGLAALVEHF
HGITLSKSSQ KADWARRPLS PTMVTYALND VNYMLDMADK LTAALRKKGR MGWFEEICRH
SMERARERHL AGHQDPWRIQ GCGKLNRKGL AALREMWTWR DAEAKTWDKP AFMVCSNADL
IQWSVALQEQ RTVAPPPRFH AHRRSRFMNA LQKFYLLDEE DYPCRPRIQR RQHSDQFEDN
LARLCKLRDE KAEELGMEGS FLITRASLEA IAEDREKGVS TLLNWQKEAL GF
|
|---|
| |