| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0537 |
|---|
| Symbol | |
|---|
| ID | 6275044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 632466 |
|---|
| End bp | 633545 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642612587 |
|---|
| Product | peptidase M42 family protein |
|---|
| Protein accession | YP_001877156 |
|---|
| Protein GI | 187735044 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.349139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA GCGACGACAG CCTTGAATTC TTAACGGAAC TTCTGGAAAC CCCCAGCCCT
TCCGGCTTTG AAATAGATGC CCAGCGCATC TGGGCGGACG AACTGCGCAA ATATACGGAA
GACGTCCAGT GCGACACTTA CGGCAATACC TGGGCCGTCT TCCACGCGGA CGCGGAAGAA
GCCCCCACAT TGATGATTGA AGCCCACGCG GATGAAATCG GCTTCATGAT CCGCCATATC
ACCAAGGACG GCTTCCTGTA TGTGGAACGC GTAGGCGGCA CGGATACGGC CATCGCACGG
GGGCGCCGCG TGCGCTTCCT GGGTTCCCAG GGAGAAGTGA TGGGGGTGAC CGGAAACACG
GCCATCCACT TGCGGGAACC CGGAGAGAAG GAACCCAAAA TCTGGGAAAT TTACGTTGAT
GTAGGCGCCT CCTCCGACAA GGAAGTAGCG GAACTCGGTT TGCGCGTGGG CCATGTGGGC
GTTTACTGCG ACGGCCCCAT GCTGATGAAT GAAAACAAGC TGGTATGCCG GGCTCTGGAC
AACCGGCTGA GCGGCTTCAT CCTGTCGGAA ATAGCCCGCA AGCTGTGCAA GCTGAAAAAG
CCCGTCTCCT GGAACGTGGT GCTCGTCAAT GCCGTGCAGG AAGAAGTGGG CTGCATTGGC
GCGGGAATGA TTACCCACCG CCTGCGCCCG GATGCGGCTA TCTGCATAGA CGTGACTCAT
GCCACGGACT CGCCCGGACT GGACAAGGGC AAATTTGGCG ATATCAGGCT TGGCGGCGGC
CCTGCGGTCA TCCACGGCAC GGCCAACCAT CCCAATCTGG TGGCCCGTCT GGAAATCGTG
GCGGACAAGA ACAAAATACC CCTCCAGCAT GAAGCCGCCG GACGCCGCAC CGGAACGGAT
ACGGACAGTA TCTACATCTC CCGCGACGGC GTAGCCTCCG CGCTGGTGTC CGTCCCCCTG
CGCTATATGC ACTCCCCGGT GGAAACGGCC TCTCTGACAG ATGTGGAAAA TACAATCAAG
CTGCTGCTGG AATTGGTCAA ATCCCTGATG CCGGGAGACT CTTTCGGGCA CAAGCTGTAA
|
|---|
| Protein sequence | MKISDDSLEF LTELLETPSP SGFEIDAQRI WADELRKYTE DVQCDTYGNT WAVFHADAEE
APTLMIEAHA DEIGFMIRHI TKDGFLYVER VGGTDTAIAR GRRVRFLGSQ GEVMGVTGNT
AIHLREPGEK EPKIWEIYVD VGASSDKEVA ELGLRVGHVG VYCDGPMLMN ENKLVCRALD
NRLSGFILSE IARKLCKLKK PVSWNVVLVN AVQEEVGCIG AGMITHRLRP DAAICIDVTH
ATDSPGLDKG KFGDIRLGGG PAVIHGTANH PNLVARLEIV ADKNKIPLQH EAAGRRTGTD
TDSIYISRDG VASALVSVPL RYMHSPVETA SLTDVENTIK LLLELVKSLM PGDSFGHKL
|
|---|
| |