Gene Amuc_0488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0488 
Symbol 
ID6275419 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp575060 
End bp576496 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content55% 
IMG OID642612538 
ProductFeS assembly protein SufB 
Protein accessionYP_001877107 
Protein GI187734995 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component 
TIGRFAM ID[TIGR01980] FeS assembly protein SufB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.8001 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.461804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATA CACCTGACAT GTCAGAGAAC GGGAACACAC AGAACCTGTT TGACTTCGAC 
CGGAGCAAGG GAAACTTCTC CTTCCCGGAA CGCCATAAAT TTGATGCCGG ATACGGCCTG
ACGGAGGCCA CTATTGACTA CATCTGCGAC GTCAAGGACG ACCCGGAATG GGTGCGCCAG
TTCCGCAAAA ACGCGCTTGC CGTTTTTGAA AGCAAGCCCA TGCCCACCCA CTGGGCTTCT
CCGGATATTA AAAAAATAGA CTTCTCCCAA ATCCGCTACT ACCTCTCCGA CGGAGAACGG
CCCAAACGAA GCTGGGACGA CGTGCCGGAG GATGTAAAGC GCACCTTCGA ACGCCTGGGC
GTTCCGGAAC AGGAACGCCA GTTTCTGGCG GGCGTGGAAG CCCAGTACGA CTCCGAATCC
GCCTACTCCA ACATGAAGGA GGAACTCCGC AGCCAGGGCG TCATCTTCGT CAACTCCACG
GAAGGCCTGA AACACCATGA AGATGTCTTC CGCCCCTGGT TTGGAAAAGT CATTCCCACG
GGAGACAACA AATTTTCCGC TCTGAACAGC GCAGTATTTT CCGGAGGTTC CTTCATTTAC
GTACCCAAAG GGGTTAAACT CAAACATCCT CTCCAGGCGT ATTTCCGAAT CAACTCGGAA
AATTTCGGGC AGTTCGAACG AACTCTCATC ATTGCGGATG AAGGTGCGGA ACTCATGTAC
ATGGAAGGAT GCACGGCACC CCAGTTTGAA ACTTCCACCC TCCACTCCGC CGTTGTGGAA
CTGGTCGCGC TCAAGGGCGC GAAAATTCAG TACGTCACCG TGCAAAACTG GTCCTCCAAT
GTCTTCAACA TGGTCACCAA GCGCGGTCTT GCCATGGAAG ATGCGGAAAT CCGCTGGATA
GACTGCAACA TTGGTTCCGG CCTCACCATG AAATACCCGG CTGTGGTGCT CAAAGGCAGG
CGCGCGCGGG GGGAAGTCAT CTCCATCGCT CTGGCAAACA CGGGCCAGCA TCAAGATACG
GGGGCCAAAA TGATCCATGC GGCGGACGAC ACTACGTCCA ACATCGTTTC CAAATCCATC
AGCATCGGCG AAGGGCGCGC CAGCTACCGG GGCCAGGTAA TCATGGGCAA AGGGCTTAAG
GGGTGCAGGA ACAACACGGA ATGCGACGCC CTACTTCTGG CAGCCAACAG CCGTACGGAC
ACCTACCCTG CCATCACGGT AAAAGGGGAT GGAGGCACGG TGCAGCATGA GGCATCCGTC
TCCCAGGTCT CTGAAGAAAT GCTTTTTTAC ATGCAGCAGC GGGGCATCCC GAAAGCTGCG
GCGATGTCTC TGGCCGTCAA TGGATTCATT AACGACCTCG TTCAGGAATT CCCCATGGAA
TACTCTGTGG AGCTGCGCAG GCTCATTGAT CTGGAAATGG AAGACAGCAT CGGATAA
 
Protein sequence
MSDTPDMSEN GNTQNLFDFD RSKGNFSFPE RHKFDAGYGL TEATIDYICD VKDDPEWVRQ 
FRKNALAVFE SKPMPTHWAS PDIKKIDFSQ IRYYLSDGER PKRSWDDVPE DVKRTFERLG
VPEQERQFLA GVEAQYDSES AYSNMKEELR SQGVIFVNST EGLKHHEDVF RPWFGKVIPT
GDNKFSALNS AVFSGGSFIY VPKGVKLKHP LQAYFRINSE NFGQFERTLI IADEGAELMY
MEGCTAPQFE TSTLHSAVVE LVALKGAKIQ YVTVQNWSSN VFNMVTKRGL AMEDAEIRWI
DCNIGSGLTM KYPAVVLKGR RARGEVISIA LANTGQHQDT GAKMIHAADD TTSNIVSKSI
SIGEGRASYR GQVIMGKGLK GCRNNTECDA LLLAANSRTD TYPAITVKGD GGTVQHEASV
SQVSEEMLFY MQQRGIPKAA AMSLAVNGFI NDLVQEFPME YSVELRRLID LEMEDSIG