| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0459 |
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| Symbol | |
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| ID | 6275823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 548175 |
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| End bp | 548774 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642612509 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_001877078 |
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| Protein GI | 187734966 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGGGAC CCATTTCATA CACGACCTTG GAAGACACCG AACTGGTCGC CAGGGCACGG
GAAGGAGATT CGCGGGCTTT TGACGAACTT GTCATTCGCC ACAGCCGCAA ACTCCATGCT
ACCCTGTACC AGATGACGGA CAACTACGAC GATGCCTATG ACATCGCCCA GGAAGCGTTC
TCCAAAGCCT ACCGGGCCTT GCGCTACTTC AATGGACAAA GCGCCTTTTA CACATGGCTG
CACTCCATTG CCGTCAACCA CGCCAGAAAC TTCCTGAAAA AACGCAACCG CAGAATGACC
TACAGTCTGG ACGACGACGA GTACGGCGAC CATACGGAAA AGGACATGAA CATGGCGGAT
GAAACGGACG GGGCGGACCC GGAACGCCGT ACCCATTTGA ATGAATTGCA GCTCAAAATC
AACGAAGCAT TGAAGAAACT TTCCACTAAA CACAGGGAAG TCGTTGTTCT TCATGACGTA
AAAGGGCTCA ACCATACGGA AATATCCGCC CTTCTCGGTA TCTCTGAAGG AACGCTCAGA
TCACGTCTGC ACTATGCCCA CAAGGAACTC CAGGGGCTGC TGGCGGAATA TCTAAGTTAA
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| Protein sequence | MSGPISYTTL EDTELVARAR EGDSRAFDEL VIRHSRKLHA TLYQMTDNYD DAYDIAQEAF
SKAYRALRYF NGQSAFYTWL HSIAVNHARN FLKKRNRRMT YSLDDDEYGD HTEKDMNMAD
ETDGADPERR THLNELQLKI NEALKKLSTK HREVVVLHDV KGLNHTEISA LLGISEGTLR
SRLHYAHKEL QGLLAEYLS
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