| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0452 |
|---|
| Symbol | |
|---|
| ID | 6275695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 538994 |
|---|
| End bp | 540808 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642612502 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_001877071 |
|---|
| Protein GI | 187734959 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAA CATCTTCTTT TTCGGCTCTT GGTATTTCAC CGGAGATTCT GGAGGCTATC
GAAGTGCTCG GCTTCGATAC CCCTTCCTCC ATTCAGGAGC AGGCGATTCC CGCCGCGATC
GGAGGGGCCG ATATTGTGGG GTTGTCCCAT ACGGGCTCCG GGAAGACGCT TGCCTTTGCC
ATTCCGGCCC TGGAGTGCAT TGATCCTGAG GAACGCTGCG TTCAGGTGCT GGCCCTCTGT
CCTACTCGGG AACTGGCCGT TCAGATTTGC CGGGAGGTGG ACAAGCTGGC TTTGTTCATG
GACGGTGTTT CCGCCGTCCC CATTTACGGA GGCTCTTCTT TCCGCCCGCA ACTGGACGCC
CTGAGGCGCG GGGTACAGTT TGTGGTGGGA ACGCCCGGAC GCGTCATGGA CCTGATGGAG
TCCGGGGCGC TAAGGCTGGA CGGTCTCCGC ATGTTGATTC TGGATGAAGC GGACGAGATG
CTGGATATGG GGTTTCTGGA AGATATCGAA CGTATCGCGG ACGCTATGCC GGAAGGGAAG
CAGACCCTGT TTTTCTCCGC TACCATGTCT CCGGAAATCA GCCGCCTGGT GAGCAGGTTC
ATGAAGGAGC CCGTCCAGAT TTCCATTGAA CGGCCTACGC TGACGGTGCC TACCATTGAA
CAGGTTTATT ACGAGGTGGT GTTTTCCTCC CGGATTGAGG TGCTCAGCCG GCTGCTTGAC
ACCGGAAAGA TTAAAATGGG GCTGGTGTTC GCCAATACCA AAAAGGTGGT GGATGACGTG
GTGGACGGTC TGACGGCCCG CGGTTATCCG GTGGATCGCC TTCATGGGGA TATGCCCCAG
ATGATGAGGG AGCGCGTGAT GGATTCCTTC CGCAAGGGGA GCCTGCGCCT TCTGGTGGCG
ACGGATATTG CCGCTCGCGG CCTGGATGTG GACGATGTGG ATGCCGTGGT GAATTTTGAA
TTGCCGCGTG ATCCGGAGGA TTACGTGCAC CGCATCGGCC GCACGGCACG CGCCGGCCGC
AAGGGGAAGG CCATCACTTT TGTGGGGCGC CGTGATTTTT CCCTGATGAG CCGCATTGAA
CGTTTCATCG GCGTTAAGTT GACTCCGGAA CCTGTGTTGA CTGCCGTTCA GGTGGACCAG
CTCCGGACAG AGTCCCTGGT GGATGATATC CTGGAACGTC TCAAGCCGGA TGCCGTGCTG
CCGGAGGAAT TGAAGGAAGT GGAGGCTGCG CCGGAGGCCA TGGCTGCGGC CCTGTTTGAC
TTGCTCCGGG AACGTACGCA CCGGGAAGTG CAGCCCATTC CGGAAGACAA GCCCGCCCGC
AGGGCGCGGC GTATGCCGCA GACCGGGGAG GAGGCGGAGA GCCCGCAGAA GGGTGATTCC
TGGCAGCATA AGGGGGATAC GGTTACGCTG TTTATGAATG GAGGCCGGAT GATTGGCTTG
CGGCCCAAAG ACATAGCCGG GTTATTTTAC AATACGGTGG AAATGGAAAA GGGAGCCGTG
GGCGATATCC GGATTTTCCC CAAGCATTCC CTGATAGAAG TGGACGCTTC CGTGGCGCCC
CTGCTTCTGG AGGCCCTGGC GACGGCTACC GTCTGCGGCT ATGAAGTTAA TGTCCGTGAA
GACAAGGGGG CTCCGGAATA TTCCGGAACT CCGCGCTCTT CCCGCCGCAA TGGAGGATTC
CGCAACAGTT ACCGCGGAGA GCGGGACCGC AGTGACCGGA GCGGATTCAG GGGAAACCGC
GGGGGCTTCC GCAGTGACCG CGGCGAACGC TGGGGCGAAC GTTCCCGCAG GGACGACAGG
AAGAAGCGTT TCTGA
|
|---|
| Protein sequence | MTQTSSFSAL GISPEILEAI EVLGFDTPSS IQEQAIPAAI GGADIVGLSH TGSGKTLAFA
IPALECIDPE ERCVQVLALC PTRELAVQIC REVDKLALFM DGVSAVPIYG GSSFRPQLDA
LRRGVQFVVG TPGRVMDLME SGALRLDGLR MLILDEADEM LDMGFLEDIE RIADAMPEGK
QTLFFSATMS PEISRLVSRF MKEPVQISIE RPTLTVPTIE QVYYEVVFSS RIEVLSRLLD
TGKIKMGLVF ANTKKVVDDV VDGLTARGYP VDRLHGDMPQ MMRERVMDSF RKGSLRLLVA
TDIAARGLDV DDVDAVVNFE LPRDPEDYVH RIGRTARAGR KGKAITFVGR RDFSLMSRIE
RFIGVKLTPE PVLTAVQVDQ LRTESLVDDI LERLKPDAVL PEELKEVEAA PEAMAAALFD
LLRERTHREV QPIPEDKPAR RARRMPQTGE EAESPQKGDS WQHKGDTVTL FMNGGRMIGL
RPKDIAGLFY NTVEMEKGAV GDIRIFPKHS LIEVDASVAP LLLEALATAT VCGYEVNVRE
DKGAPEYSGT PRSSRRNGGF RNSYRGERDR SDRSGFRGNR GGFRSDRGER WGERSRRDDR
KKRF
|
|---|
| |