| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0315 |
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| Symbol | |
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| ID | 6275060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 371543 |
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| End bp | 373429 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642612369 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_001876938 |
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| Protein GI | 187734826 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.380771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCTC CCTCACCTGA ACTTCCGGAA CTGCTGGCAA GCATCCGCAG TCACGCAGAT
CTGATGGAAA TCCCTGAGTC GGAACTGCCC AGGCTTGCGG AAGAAATCCG GAATACTCTC
ATTCACTCCC TTTCCCTCAC CGGAGGCCAC CTGGGCCCCA ACCTGGGCGT GGTAGAGCTG
AGCATTGCCC TTCACCGCGT CTTTGAAACG CCGCGGGATA AAATCATCTT TGATGTCTCC
CACCAGGCCT ATGTCCATAA AATGCTGACT GGGCGCGCTC CCCTGATCCA CACCATCCGC
CAGCACGGGG GGCTTTCCGG ATTTGCCAAA ATGTCCGAAT CCCCTCATGA CTCCTACGGA
GCGGGGCATG CGGGCACGGC GCTTTCCGCC GCCCTGGGCA TGTGCGCGGC CAGGGACCTG
AAAGGAGAAG ACTACCATGT GGTGGCCGTA GCCGGGGATG CGGCATTCAC CTGCGGCACC
ACTCTGGAGG CGCTGAACAA TATCAGCCAG ACCACCAAAC GGTACATCAC CATTCTGAAT
GACAACGAAT GGGCCATCGA CAAAAACGTA GGAGCGCTGG CAAAATACTT CAACTCCCTG
CAAACATCGG AAACGTTTTC CTGGTTAAGG GATAAAACGG CTTCCTTCAT TGAAAAGCTG
GGCGGCACGC AGGCCAGGGA CTTTGCTTTC AAGCTGGAAG GCACCACCAA AAACCTTATC
TTCCCGTCCC TGCTGTTCAA CAAATTCGGG CTGCGCTATT TCGGCCCCCT GGACGGACAC
GACATTCCCA CCCTGATACG CACCCTTGCC TACATCAAGG ATCTCAACGA ACCCGTTATT
CTGCATGTGG TCACTCAGAA GGGTAAGGGC TACCAGCCCG CTCTGGACAA CCCCACCAAA
TTCCACGGCC TGGGCTCCTA TTGCGTGAGG GACGGGGAAA CGCAGGCCGC CCCCACCCCC
ACATTCTCCC ATATCTTCGG CTCCACGCTG GTGGAAATGG CGCGCGAGGA TGAATCCATC
ACAGCCATCA CGGCCGCCAT GGCCAGCGGC ACCAAGCTGG ACTTATTCAA GGAAGCCTTC
CCCAAACGCT ATTTCGACGT AGGGATCGCG GAAGAGCACG GCGCCCTCTT CGCCTGCGGG
CTGGCGGCGG AGGGCATGAA ACCCTACATC GCCATTTACT CCACTTTCAT GCAGCGCTGT
ATTGACATGA TTCAACATGA CGCCGCGCTG CAAAAACTGC CCGTGCGTTT CTGCATGGAC
CGCGCCGGGC TTTCCCCGGA CGACGGCCCC ACACACCACG GGCTGTTTGA CATTGCCATG
ATTCGCAGTA TCCCGAACAT TGTCTTCATG CAGCCCAAGG ATGAAGCCGA ATTCGTCCAC
ATGCTCCGAA CCATGAACCA TTACCAGAAC GGCCCCACCG TTATCCGCTA TCCCAGAGGA
TGCGGCGCCG GAACCCCCGT CCCCGCCAAG GCGGAAATCC TCCCCATCGG CAAGGCGGAA
GTACTTCAGG CGGGACAGGA TGTAACCCTC GTTTCCCTGG GCACCATGAT CGGCATCGCC
CGGGAAACCG CCTCGCTGCT GGAAGTCCGC GGCTACACCG TCACCCTGAT CAATGCCCGT
TTCATCAAAC CTCTGGATGA TGAATGCATC CGCCGTCACG CAGCACGCAG CCGGGTGGTC
TGCACCTTCG AAGACCACTC CATCAGCGGC GGCTTCAACT CAGCCGTTCT CGAATCCCTG
GAAACCGGAG ATGTCAAGAC GCCCGTGGAA GCCATCGCTT GGCCGGACCA ATTTATTGAG
CATGGTTCGG AATCCATCCT CAGAAAAAAA TATGGACTCA CGGCGGAAGC CGCGCTACAA
AAAATCATTC CCCACCTGAA CTCCTGA
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| Protein sequence | MNSPSPELPE LLASIRSHAD LMEIPESELP RLAEEIRNTL IHSLSLTGGH LGPNLGVVEL
SIALHRVFET PRDKIIFDVS HQAYVHKMLT GRAPLIHTIR QHGGLSGFAK MSESPHDSYG
AGHAGTALSA ALGMCAARDL KGEDYHVVAV AGDAAFTCGT TLEALNNISQ TTKRYITILN
DNEWAIDKNV GALAKYFNSL QTSETFSWLR DKTASFIEKL GGTQARDFAF KLEGTTKNLI
FPSLLFNKFG LRYFGPLDGH DIPTLIRTLA YIKDLNEPVI LHVVTQKGKG YQPALDNPTK
FHGLGSYCVR DGETQAAPTP TFSHIFGSTL VEMAREDESI TAITAAMASG TKLDLFKEAF
PKRYFDVGIA EEHGALFACG LAAEGMKPYI AIYSTFMQRC IDMIQHDAAL QKLPVRFCMD
RAGLSPDDGP THHGLFDIAM IRSIPNIVFM QPKDEAEFVH MLRTMNHYQN GPTVIRYPRG
CGAGTPVPAK AEILPIGKAE VLQAGQDVTL VSLGTMIGIA RETASLLEVR GYTVTLINAR
FIKPLDDECI RRHAARSRVV CTFEDHSISG GFNSAVLESL ETGDVKTPVE AIAWPDQFIE
HGSESILRKK YGLTAEAALQ KIIPHLNS
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