Gene Amuc_0297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0297 
Symbol 
ID6275111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp356124 
End bp356813 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content61% 
IMG OID642612351 
Productribosomal protein S3 
Protein accessionYP_001876920 
Protein GI187734808 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0092] Ribosomal protein S3 
TIGRFAM ID[TIGR01009] ribosomal protein S3, bacterial type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.888515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCAGA AAGTAAATCC AATCGGGTTC CGCCTCGCCG TCAACAAGGA CTGGCGCTCC 
AAGTGGTACG CCACGGGCCA GGATTACGCC ACCAAGCTGC ATGAAGACTT GGTGATGCGC
AAGTACATCA AGGAACAGTT GATGTCCGCC GCCGTTTCCA GCATCGTGAT TGAACGCGCC
TGGAACAGTG TCCGCATCAC CGTCCACACT GCCCGTCCGG GGCTTGTCAT TGGCCGCAAG
GGTGAGGAAA TTGAAAAGAT CCGCCAGTAC CTCCAGGGCC TGTGCGGCGC TTCCACCCAG
GTCAACATTG ACATTGTGGA AATCCGTTCC CCTGAAACGG ACGCCCAGCT TATTGCAGAG
AACGTGGCTG TTCAACTGGA ACGCCGCGTT TCCTTCCGCC GCGCCATGAA GCGCGCCGTG
CAGGTTGCCA TGGAACGCGG GGCCGACGGC ATCCGCATCC GCTGCGCCGG CCGTCTTGGC
GGGGCTGACA TTGCCCGTGC CGAATGGTAC CGCGAAGGCA AGGTGCCGTT GCAGACGCTC
CGCACTCCGA TTGACTACGG CTTTGCCGAA GCCCGTACCC TGTACGGCAT CATCGGTGTG
AAGTGCTGGG TCAACAAGCG CGATGAAGTC GTCTCCCAGC AGAATTCCCG TCCGTCCGGC
CCTCGCGGAC CCCGTCGTCC GCGCGCCTAA
 
Protein sequence
MGQKVNPIGF RLAVNKDWRS KWYATGQDYA TKLHEDLVMR KYIKEQLMSA AVSSIVIERA 
WNSVRITVHT ARPGLVIGRK GEEIEKIRQY LQGLCGASTQ VNIDIVEIRS PETDAQLIAE
NVAVQLERRV SFRRAMKRAV QVAMERGADG IRIRCAGRLG GADIARAEWY REGKVPLQTL
RTPIDYGFAE ARTLYGIIGV KCWVNKRDEV VSQQNSRPSG PRGPRRPRA