| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0235 |
|---|
| Symbol | |
|---|
| ID | 6275288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 292855 |
|---|
| End bp | 294519 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642612283 |
|---|
| Product | alpha-glucan phosphorylase |
|---|
| Protein accession | YP_001876859 |
|---|
| Protein GI | 187734747 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02094] alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.400789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAT CATTTTTACC CACCATTTTC GAGCACCCGT ATGAAATAGA CCCCAAATAT
GGGAAAAGCG TTGCGTACTT CTCCATGGAA TACGCCATTG ATAATTCATT TAAAATCTAT
TCCGGCGGCC TGGGCTATCT GTCCGGCTCC CATATGCGCA GTGCGCATGA TCTGCGCCAG
AACCTCGTAG GCGTCGGCAT TCTGTGGAGC TACGGCTACT ACAACCAGAT CCGTGCGGAG
GACGGATCCA TGGCCACGCA ATACATGCGT AAAAACTACC CGTTCCTGGA AGATCACAAC
ATCAAATTCC TCATTCATGT CTGCGGAGCG CCCGTCTGGG TAAAAGCCTA CTTCCTGAAT
CCGGAAACAT TCGGCACTGC GCCCATGTTC TTCCTTTCCA CGGACCTGGA GGAAAATGAC
GAGGAAAGCC GCAATATCTC CCGCCGCCTG TACGACGCCA ACGGCTTCAC CCGCATCGCC
CAGTACGTAC TGCTGGGCAA AGGAGGCGCC CGCCTTTTTG ACGAACTGGG CATTGAACCG
GAAATCTACC ATCTAAACGA AGCCCACGGC CTGGCTGCGG CCTTCCACGT GCTTGCCAAG
ACGGGCAGCG TGGAAGAAGT GCGCAAGCGT TTCGTTTTCA CTACCCATAC CCCGGAAGAA
GCCGGCAACG AAAAGATGGA CGTAAACACC ATGAATACGT TCTCCTTCTT CGACGGGCTC
TCCATGGAAC AGGTGCGCGC CGCCGTAGGC ATGACGGACA ATACGTTCAA CTACACGCTG
GCCGCCCTGC GCCTCTCCCA CATCGCCAAC GGCGTTTCCA AACTCCATGG AGAAGTATCC
CGCCAGATGT GGAAGGACTA TGAAGGCATA TGCCCCATCA TCCATATCAC GAATGCCCAG
AACCAGAAAT ACTGGCAGGA TCCGGAACTG GCGGAAGCTT TCCAGGCCCG CAACAAGGAA
GCGTTCATCC GCCGCAAGCG GGCTCTGAAA AAAGCCCTCT TCCGCATGGT GGGTGAACAA
ACGGGCCGCG TCTTTGACCC GAACTGCCTC ACCATCGTAT GGGCTCGCCG TTTTGCGGCC
TACAAGCGTC CGGACCTGGT CACCGGCAAT CCCACGATGT TCGAACGCAT GCTCCAGCGC
ACCAACTATC CGGTGCAGTT CATCTGGGCC GGCAAACCCT ACCCGATGGA TCATGGCGCT
ATTGAAATCT TCAACCGCCT GAATGACTTG ACGGCCAAAT ATCCCCGTTC CGCCGTGCTC
ACCGGTTATG AACTGGGCCT GAGCCGCTAC CTGAAAAACG GCTCCGACGT ATGGCTCAAC
AACCCCGTGG TAACCCGGGA AGCATCCGGC ACCTCCGGCA TGTCCGCCGC CATGAACGGC
TCCATCTCCG TCTCCACCAA TGACGGCTGG ATCTGTGAAT TCGCCAAGGA CGGAGAAAAC
TGCTTCGTCA TTCCGGAAGC GCCCGCCCAT CTCTCCCCGG AAGCCCGCGA CCGCTCCGAC
CGCGATAACT TCTACAACAT TCTGGACGAC AAGATTCTTC CCCTCTACTA CGATCACAAC
GACAAGTGGA TGGACATCGT TTTCAATGCG ATGACAGACA TCTATCCCGA ATTCGACTCC
GACCGCATGG CGGATCAGTA CTACACGGAA ATGTACAACA GCTAA
|
|---|
| Protein sequence | MAKSFLPTIF EHPYEIDPKY GKSVAYFSME YAIDNSFKIY SGGLGYLSGS HMRSAHDLRQ
NLVGVGILWS YGYYNQIRAE DGSMATQYMR KNYPFLEDHN IKFLIHVCGA PVWVKAYFLN
PETFGTAPMF FLSTDLEEND EESRNISRRL YDANGFTRIA QYVLLGKGGA RLFDELGIEP
EIYHLNEAHG LAAAFHVLAK TGSVEEVRKR FVFTTHTPEE AGNEKMDVNT MNTFSFFDGL
SMEQVRAAVG MTDNTFNYTL AALRLSHIAN GVSKLHGEVS RQMWKDYEGI CPIIHITNAQ
NQKYWQDPEL AEAFQARNKE AFIRRKRALK KALFRMVGEQ TGRVFDPNCL TIVWARRFAA
YKRPDLVTGN PTMFERMLQR TNYPVQFIWA GKPYPMDHGA IEIFNRLNDL TAKYPRSAVL
TGYELGLSRY LKNGSDVWLN NPVVTREASG TSGMSAAMNG SISVSTNDGW ICEFAKDGEN
CFVIPEAPAH LSPEARDRSD RDNFYNILDD KILPLYYDHN DKWMDIVFNA MTDIYPEFDS
DRMADQYYTE MYNS
|
|---|
| |