| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0188 |
|---|
| Symbol | |
|---|
| ID | 6275358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 236547 |
|---|
| End bp | 237587 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642612234 |
|---|
| Product | Esterase/lipase-like protein |
|---|
| Protein accession | YP_001876813 |
|---|
| Protein GI | 187734701 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.871358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA AACAGATATT ACTCTCCGCT CTTTTTCTGA CATTCGCCTG TGCTTCAGCC
GGGGCCGCTC CGCCTGAGCC GTCCGCGCTG GGCGCCTTCT GCCCTCCCTC AGAGGGAAAA
GCCTTTCACT CCGGATGGAT TTCCCTTGGG CTCAAAGCGG CGGACCTGAA AGAAAAACAA
GCCTCCGCCG GACACATTAC GGACGTAGGG GAAGCGCAAA TCCAGCTTCA CTTTCCCGCC
GGATGGAGTC CGCAGGACAG GCGCACGGCC CTGTGTATTT TTCCGGGAGG GGGGTATGCC
ATCCAGGCCA TTGAAAAGGA AGGGAGCCGC ATTGCCGGCT GGGCGGCGGA ACACGGCATG
GTGGGGGTTG TCGTGAAATA CCGCGTTTCA GGAACCGGCA ATGCCCTGGG GAAGTTTCCC
GGTCCCCTGC TGGACGCCCG CCAGGCTCTG AGGACCGTGC GGAAAAACGC CTCTTCCCTG
GGAATTGCCC CTCTTCGCAT CGGCGTCATG GGCTTTTCCG CTGGCGGCCA TCTGGCGGCC
ATGGCCTCTA CGCTGTGGAA CCGCACCCTG CCGGAAGAAG CGGAAAATCC GCTGAAAAAC
ATTTCCGCCC GTCCGGATTT TTCCATGTTT ATTTATCCCG TCATTACCAT GGCGCCCCAT
ACTACCCACG GGGGAACGCG CAACAAAATA TTGGGGGCCC ATCCATCCCC TGCCCTGGAG
GAGATGTGTT CCGCGGAGAG ACAGGTGACG GAGCAGGCGC CGCCAGTGTT CCTCGTCCAC
GCTCTGGATG ACGGCGTTTC CTGCGCCAAC AGCAGGCTGA TGGAACAGGC TTGCCGGGAA
AAGGGGGTTC CCGCCAGTCT GAACTTCTAT CCCACGGGAG GCCACGGGTA TGGCATGGAA
AAACGCGGAC ATCCCACGGA TCAATGGCCT GAAGCCGCCG AACAATGGCT CAGGGAACAG
GGATTCCTTT CTTCCCCGTC TTCTGCCCGC GGGGGTGCGC CCTCCGGAGC GGGCACTTCC
TCCGGAACAC GGCGGGAATG A
|
|---|
| Protein sequence | MNKKQILLSA LFLTFACASA GAAPPEPSAL GAFCPPSEGK AFHSGWISLG LKAADLKEKQ
ASAGHITDVG EAQIQLHFPA GWSPQDRRTA LCIFPGGGYA IQAIEKEGSR IAGWAAEHGM
VGVVVKYRVS GTGNALGKFP GPLLDARQAL RTVRKNASSL GIAPLRIGVM GFSAGGHLAA
MASTLWNRTL PEEAENPLKN ISARPDFSMF IYPVITMAPH TTHGGTRNKI LGAHPSPALE
EMCSAERQVT EQAPPVFLVH ALDDGVSCAN SRLMEQACRE KGVPASLNFY PTGGHGYGME
KRGHPTDQWP EAAEQWLREQ GFLSSPSSAR GGAPSGAGTS SGTRRE
|
|---|
| |