| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0143 |
|---|
| Symbol | |
|---|
| ID | 6274890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 174389 |
|---|
| End bp | 175321 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642612188 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001876768 |
|---|
| Protein GI | 187734656 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAAC AGGGTTCCTC CCTGTGGAAG GACGCTTTTC TGCGTCTTTC CCGCAACCGG
GCGGCCATGT TTTCCCTGCT GGCGTTGGCG CTGATTGCGG CGGCCTGTTT TCTGGGTCCC
CTGCTGCCGT GGCTGCCTCA TCCTAATGTG CAGGATTTGT CCCGGATTGC GGAAAGCCCT
TCCTGGGACC ATTGGTTCGG CACGGACCAG CTTGGGAGGG ACCTGCTGGC GCGTGTCCTG
TACGGCGGCC GCATTTCCCT GCTGGTGGGA GTGGTCGCTA CGGGCGTTTC CCTGGTGATT
GGCGTGGCGT ACGGACTGGT TTCCGGTTAT GCCGGAGGCA GGCTGGATGC CCTGATGATG
CGCCTGGTGG ATGTGCTTTT TGCCCTGCCG TTCATTGTGC TGGTGATTAT TTTTTCCTTG
TCCGTGGAGG AGCCGGCCCG GAGGCTGACG CAGTGGGTTT CCGGCATGAC GGGCTGGTCT
GTGGAAATGG TGAGCCCCAT GACCGGGCTG ATTCCCCTGT TCATCGCCAT CGGCGCTTTG
GGCTGGCTGA CGCTGGCGCG TATTGTCCGG ACGCAGACGA TGGAGCTGAA AGGGCAGGAG
TTTGTGGAAG CTGCCCGTTC CCTGGGCATC GGTCACATGA AGATTCTGTT CCGCCATATT
GCTCCGAATT TGTTCGGGGC CGTCATCGTG TACACGACGC TGGCCGTTCC CGGCATCATG
CTGCTGGAAG CCGTCCTGTC CTTTCTGGGG CTGGGCGTGA AGGCTCCCAA TTCCTCATGG
GGAACGCTGA TCAAGGAAGG GGCGGACCGC ATGGAGGTAA GTCCGGAATT GCTTTTGTTC
CCGGCGCTCC TGTTTTCGGC TACCCTGCTG GCGCTGAATT TCCTGGGGGA CGGCCTGCGG
GACGCCCTGG ATCCCAAGTC CTCCAAGGAC TGA
|
|---|
| Protein sequence | MEEQGSSLWK DAFLRLSRNR AAMFSLLALA LIAAACFLGP LLPWLPHPNV QDLSRIAESP
SWDHWFGTDQ LGRDLLARVL YGGRISLLVG VVATGVSLVI GVAYGLVSGY AGGRLDALMM
RLVDVLFALP FIVLVIIFSL SVEEPARRLT QWVSGMTGWS VEMVSPMTGL IPLFIAIGAL
GWLTLARIVR TQTMELKGQE FVEAARSLGI GHMKILFRHI APNLFGAVIV YTTLAVPGIM
LLEAVLSFLG LGVKAPNSSW GTLIKEGADR MEVSPELLLF PALLFSATLL ALNFLGDGLR
DALDPKSSKD
|
|---|
| |