Gene Amuc_0110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0110 
Symbol 
ID6274939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp138287 
End bp138973 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content60% 
IMG OID642612155 
Productprotein of unknown function UPF0066 
Protein accessionYP_001876736 
Protein GI187734624 
COG category[S] Function unknown 
COG ID[COG1720] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00104] probable methyltransferase, YaeB/AF_0241 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCAGCCCG TCGCCCGCGT CAGCACGTGT TATCCGGACA AATTCGGTGC GCCGCGCCAG 
AGCGGCCTGG TTCCGGATGC GCGGGCGCGG CTGGTATTTG AGCCGCCGTT CCGCCATCCG
GATGCCGTTC GTGGTCTGGA AGGGTTTTCC CATCTGTGGC TGGTCTGGGT GTTCAGTGAA
AACGTGGATA AGGGGTGGAG CCCTACGGTC CGGCCTCCGC GGCTGGGGGG CAATGTGCGC
ATGGGGGTGT TCGCCACGCG TGCGCCGTTC CGTCCCAATC CCATCGGGTT GTCTGCCGTC
AGGCTGGAAC GGGTGGAATT GCATCCTCTG GACGGCCCGG TATTGCATCT TTCCGGCGTG
GATTTGGTGG ATGGCACCCC CATTCTGGAT ATCAAGCCCT ATGTTCCTCT GGCGGACTGC
ATTCCGGAGG CGTCGGAAGG GTTTACGGCT GTCCCCTATG AACGGCTGGA TGTGGAAATT
CCCGAATCTT TTGGCGATTC CATGTCTCCG GAAGAGAGGA GTGCACTGGA AGATACGCTG
TCCCTGGATC CCCGTCCCCA GTATCAGGAT GATCCGGAAC GGGTTTACGG CCTTTTGTTC
TCTGGCTGGG AGGTGAAATT CAAGGTAGAG GGAAAGCGGC TGTGCGTATT GTCCCTGGAA
AGGAGGCGAA GCGGTTCCGG CCTTTGA
 
Protein sequence
MQPVARVSTC YPDKFGAPRQ SGLVPDARAR LVFEPPFRHP DAVRGLEGFS HLWLVWVFSE 
NVDKGWSPTV RPPRLGGNVR MGVFATRAPF RPNPIGLSAV RLERVELHPL DGPVLHLSGV
DLVDGTPILD IKPYVPLADC IPEASEGFTA VPYERLDVEI PESFGDSMSP EERSALEDTL
SLDPRPQYQD DPERVYGLLF SGWEVKFKVE GKRLCVLSLE RRRSGSGL