Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_0105 |
Symbol | |
ID | 6274950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | + |
Start bp | 130305 |
End bp | 131678 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642612150 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001876731 |
Protein GI | 187734619 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.265235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCCA CGTTCAAACA TCTCCCCCTT CTGGCCGCCT GTTTCCTTGG CTCCTGCATG GTAGGCCCTG ATTTCCGGAC GCCGACCAAT GACCTCCCCG CCACGTGGGA GGCGAACAGG CCCCCCCACA GTTCGGACAA AGATTTGCGT TCCTGGTGGA ATATCTTTGG AGACCCCCAG CTCAACCGCC TGGTCTCCAC CTCCCTCAAC AACAATCCGG ACATGAAGGT GGCTTTGCTC CGCATCCGGG AGGCCAGGGA AAAGCTCCGC GTCTCCCAGG CATCCCTGCT TCCCTCCGCA GACGCCAGCG CCGGGTGGAG CCTGTCCCCG GACAGAGGTT TTCGCAGCTC CACTTCCCAG AACTTCTCCC TGGGAGCGTC CACCTCCTGG GAGCTGGACC TCTTTGGCGG CAACCGGCGT TCCATCGAGG CCTCCCGCGC CTCCCTCATG TCCACAGAAG CTTCCGCAGG AGCCGTGCGC ACAGCCCTGC TGGCGGACGT CGCCACGGCC TACTTTGACT GGATTACCGC CTGCGAACAG CTCCGCATCG CCAGGGAACA ACTGGAAATC CAACGCAGCA CCCTCACCAT TGCGGAAAAA CGCTACAAAA CGGAATTCGC CCCCCGTCTG GATGTGGAGC AGGCCACCTC CACCGTCGCC TCCACGGAAA GCCGCATCCC GCAACTGGAA GCACAGGTGG CCTCCTCTAA AAACCAGCTC GCCGTGCTGC TGGGAACATA CAATTCCCGT GTAGAACTGA CGCTGCCCAA AGCTTCCGTC TTTGAGAAAA CGCCCACCGT TCCGGTAGGC CTCCCCTCCG AACTCCTGCG GCGCAGGCCC GACGTTATCG CCGCTGAGGC GGACCTGCAC GCGGCCGTGG CCAACGTGGG CGTAGCCGTA GCGGATCTGT ACCCGCGCTT CAGCCTGACG GGCTCCCTTT CCAGCCGCGG CGGAGATTTC GGCCAGCTCT TCAGGGAAAA CAACAACGCT TGGTCCCTGG GAGGGAATCT GCTCCAGCCC CTGTTCCGGG GCGGAGCCCT GAGAGCCACG GTACGCGCCC AGAAAGCCGC AGCAGAACAA GCTGCGGAAA CTTACCGCAA AACGCTCATT ACCGCCGTCT CCGAGGTGGA GGACGCCCTG ATCGCCTATG GCAGCTATAC CTCCCAGATG CAATACCTGC ACAAGGAAAA CAACGCCAAC AGAGAAGCGT TCCAGCTCTC CCGCACCCTG TACATCAACG GCGAGACGGA CTTCCTGAAC GTGATCACCG CCCAGCGTTC CTGGCTCAGC TCGGAGGAAT CCCTGGTCAC CATGAAGCAG AACATCCGCA AGGCCGTGGT GCAGCTCGCG CGCGCCCTGG GCGGAGGGTG GTAA
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Protein sequence | MSSTFKHLPL LAACFLGSCM VGPDFRTPTN DLPATWEANR PPHSSDKDLR SWWNIFGDPQ LNRLVSTSLN NNPDMKVALL RIREAREKLR VSQASLLPSA DASAGWSLSP DRGFRSSTSQ NFSLGASTSW ELDLFGGNRR SIEASRASLM STEASAGAVR TALLADVATA YFDWITACEQ LRIAREQLEI QRSTLTIAEK RYKTEFAPRL DVEQATSTVA STESRIPQLE AQVASSKNQL AVLLGTYNSR VELTLPKASV FEKTPTVPVG LPSELLRRRP DVIAAEADLH AAVANVGVAV ADLYPRFSLT GSLSSRGGDF GQLFRENNNA WSLGGNLLQP LFRGGALRAT VRAQKAAAEQ AAETYRKTLI TAVSEVEDAL IAYGSYTSQM QYLHKENNAN REAFQLSRTL YINGETDFLN VITAQRSWLS SEESLVTMKQ NIRKAVVQLA RALGGGW
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