| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0064 |
|---|
| Symbol | |
|---|
| ID | 6275085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 86946 |
|---|
| End bp | 87824 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642612106 |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | YP_001876690 |
|---|
| Protein GI | 187734578 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0263266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGATCA GATTTTACCT GAATGACCAG GCGGAGCGCA TCATGGCTCT GTGGAGCGAA
AGCCGCGGGG AATACCTGGC GGCGGACTCC GTGCTTGCCG AGGCTGATGC CTGCATTTGC
GGAGAAACGG GTTCCTGCGG AGAGGAAATG AAGCGCATTG TCGCGTTTCT GGATAGTGCC
GCCGCCAAAG CTGTCAACCC TGAATGGATG ATTGATACCG CGCTGCCCTG TTCCCCTTCC
AAGCTGGTGT GCCTGGGAAA AAGTTATGCA GACCATGCGA AGGAGTTTGA CGGGGATTCC
GTGCAGGAAC CGGCTGTTTT TCTGAAGTCG CCTTCCGCCA TTACTTCCTG CAGTGATGTT
GTTTTGTATC CGCCCGGCTG CGACAAGCTG GATTATGAGA TTGAATTGGC CGTAGTGATT
AAGGATGTGC TGAAAAACGC TTCCCCAGAG GAGGCCGCAC GGGCTATCAG CGGCTATACC
CTGATGTGCG ACTATTCGGA AAGGGCCAAC CAGCTGGAAC ATGGCGGGCA GTGGACCAAG
GGGAAGAGCT ATGACAGCTT TGCCCCGATG GGGCCCACGT TCATTTCCGC TGATGAACTT
GGGGACGGCT CCGGCATTCC TCTGGAATTG AAAGTGAACG GGGAAGTGCG CCAGAGCGGC
AATACGGACG GCTTGATCTG GCCTGTTCCG CGTCTGATTG CCTATGTTTC CCGGTTCATG
ACTTTATGGC CCGGAGATGT GGTTTCCACC GGCACTCCGG GAGGCGTGGG GATGGGGATG
AAGCCTCCGG TATATTTGAA ACCCGGGGAT GTGGTGGAAT GGGGAAGCCC CGCTTTTGGC
TTCGCTTCCC AGGCTGTGGT AATTGATGAT GAGGGGTAG
|
|---|
| Protein sequence | MKIRFYLNDQ AERIMALWSE SRGEYLAADS VLAEADACIC GETGSCGEEM KRIVAFLDSA
AAKAVNPEWM IDTALPCSPS KLVCLGKSYA DHAKEFDGDS VQEPAVFLKS PSAITSCSDV
VLYPPGCDKL DYEIELAVVI KDVLKNASPE EAARAISGYT LMCDYSERAN QLEHGGQWTK
GKSYDSFAPM GPTFISADEL GDGSGIPLEL KVNGEVRQSG NTDGLIWPVP RLIAYVSRFM
TLWPGDVVST GTPGGVGMGM KPPVYLKPGD VVEWGSPAFG FASQAVVIDD EG
|
|---|
| |