Gene Amuc_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0034 
Symbol 
ID6275179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp41923 
End bp43443 
Gene Length1521 bp 
Protein Length506 aa 
Translation table11 
GC content61% 
IMG OID642612074 
Productprolyl-tRNA synthetase 
Protein accessionYP_001876662 
Protein GI187734550 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0442] Prolyl-tRNA synthetase 
TIGRFAM ID[TIGR00408] prolyl-tRNA synthetase, family I 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.599841 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAGC AAACCGCAAT CACCCCTACC CGCGCCCAGG ATTTCCCCGA GTGGTACCAG 
CAAGTCATCA AGGCCGCCGA CATGGCGGAA AATTCCGAGG TCCGCGGCTG CATGGTCATC
AAGCCATGGG GCTACGCCAT TTGGGAACTC ATTCAAAAGG ACCTGGACCA GCGCTTCAAG
GACACCGGCC ATACGAACGC CTATTTCCCC CTCCTGATTC CTATCTCCTA TCTGGAAAAG
GAAGCGGAGC ATGCTGAAGG CTTCGCCACG GAATGCGCCG TAGTCACCCA CCACAGGCTG
GAAGCGCAAA AGGATGAAGC CACCGGCAAG ACACGCATGA TTCCCACCGG GGAGCTTACG
GAACCCTTCG TCATCCGGCC CACCTCGGAA ACCGTCATCG GCGCGGCTTT CGCCCGCTGG
ACCTCCAGTT ACCGGGACCT GCCCCTCAAA GTCAACCAGT GGTGCAACGT GATGCGCTGG
GAAATGAGGC CCCGAATCTT CCTGCGCACG GCGGAATTCC TGTGGCAGGA AGGGCATACG
GCCCATGAAA CCCGCGAGGA AGCCATTGAG GAAACCCTCA CCATGCACAA GGTTTATGAA
GAATTCCAGC GGGACGTGCT CGCCATCCCC ACCATTCCAG GGGAAAAGAC GGAGGCGGAA
CGCTTCCCCG GAGCGGAACA AACCTACACG GTGGAAGCCA TGGTGCAGGA CCGCAAGGCC
ATCCAGGCAG GGACCTCCCA CTTCCTGGGG CAGAATTTCT CCAAGTCCCA GAACATCTGC
TTCGCCGGAA GGGACAACAC CCAGCAATTC GCATGGACAA GCTCCTGGGG CGTTTCCACC
CGCATGATCG GAGCGCTCAT CATGATGCAC TCCGACGACG ACGGACTCGT CTGCCCGCCC
CGCGTCGCTC CCCAGCAAAT CGTCATCATT CCCGTCACGC CCAAGGAAGA AAGCCGCCAG
GCCGTTCTGG ACCACTGCGA GGAACTGGCG CGCACCCTCC GCGCCAAAAC CTTCCACGGC
CAGCCGCTGC GCGTGCTGGT GGACAGGCGC GACCTGGGCG GCGGCGCCAA GAAATGGGAA
TGGGTGAAAA AAGGCGTGCC CGTGCGTCTG GAAATAGGCC CCCGGGACCT GGAAAAAGGC
TCCGTCTGCC TTCAGCGGCG CGACCGGCCC GCCAATGAAA AATCCTTCGT CCCGGAAACG
GAACTGATCG ATACCGCTGC GGATATTCTC CAAAGCATCC AGGACACCCT GCTTCAGCGG
GCCATTGCCT TCCGGGACTC CCATATCCGC CCCGCCTCCA CTCTGCGGGA ATTGGAAGAA
AACTTCTCCG GAGAGGGAGA TGCAGATTGG CTCCAGGTGC CGTGGGACGG GTCTCCGGAA
GAAGAAGAAG AACTGGCTAA ACGGCTGCGC ATTTCCATCC GCTGCATCCC GCTCGGCGAG
CTGGGCCGCG GCGAACCGGC ACCCTGCATC CTCACCGGAC GTATGACGAA ACGCCGTGTT
CTCTGGGCCA GAAGCTACTG A
 
Protein sequence
MSQQTAITPT RAQDFPEWYQ QVIKAADMAE NSEVRGCMVI KPWGYAIWEL IQKDLDQRFK 
DTGHTNAYFP LLIPISYLEK EAEHAEGFAT ECAVVTHHRL EAQKDEATGK TRMIPTGELT
EPFVIRPTSE TVIGAAFARW TSSYRDLPLK VNQWCNVMRW EMRPRIFLRT AEFLWQEGHT
AHETREEAIE ETLTMHKVYE EFQRDVLAIP TIPGEKTEAE RFPGAEQTYT VEAMVQDRKA
IQAGTSHFLG QNFSKSQNIC FAGRDNTQQF AWTSSWGVST RMIGALIMMH SDDDGLVCPP
RVAPQQIVII PVTPKEESRQ AVLDHCEELA RTLRAKTFHG QPLRVLVDRR DLGGGAKKWE
WVKKGVPVRL EIGPRDLEKG SVCLQRRDRP ANEKSFVPET ELIDTAADIL QSIQDTLLQR
AIAFRDSHIR PASTLRELEE NFSGEGDADW LQVPWDGSPE EEEELAKRLR ISIRCIPLGE
LGRGEPAPCI LTGRMTKRRV LWARSY