| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0029 |
|---|
| Symbol | |
|---|
| ID | 6275193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 37306 |
|---|
| End bp | 38232 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642612069 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001876657 |
|---|
| Protein GI | 187734545 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.497032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTC TCGTAACCGG CGGCGCCGGA TTCATCGGTT CCCACATTGT GGAACACTAT
CAGGATAAGG CGGAGGAAAT CCGTGTGCTG GACAACCTGC GCACGGGCTA TCTCAAGAAC
CTGGAAGGGC TCAGGCACAC GTTCATCGAA GGTTCCATCT GCGACCGGGA GCTGGTGCGC
CAGGCGGTGC AGGGAGTGGA CTATATTTTC CACATGGCCG CGCTCGTCTC CGTGCCGGAA
TCCATGAGCA AGATCAGCGA ATGCATCGAC ATCAACGTCA ACGGTTTGCT GAACGTGCTG
GAGGAAGCTT CCGCCGCCGG AGTCAAAAAA ATCGTGCTGG CGTCTTCCGC CGCCATTTAC
GGAGACAATC CCACGGTGCC CAAACTGGAA ACCATGTACC CGGAACCCAA GAGTCCCTAT
GCCATTACCA AGCTGGATGG GGAATACTAC CTCAACATGT TCCGGGCGGA AGGAAAAATT
AATACGGCAG CCGTGCGCTT CTTCAATGTC TTCGGCCCCC GGCAGGACCC CAAGGGCGCC
TATGCCGCAG CCGTGCCCAT TTTCATTGAA AAAGCTGTCA AAGGAGAAGA CATCACCGTG
TATGGGGACG GCTCCCAGAC GCGCGATTTC ATTTATGTGA AAGACATTGT AGGAGCCCTC
ACCTTTGTGG CGGAACACCC GGAAGTCACC GGCGTGTTCA ATGCCGGTTA CGGCGGCCAG
ATCACCATTG AAGAGCTGGC GCAGAACATC ATCAAGGCTG CCGGGTCTTC CTCCAAGGTG
CTTCATGCCC CGGAACGTCC GGGAGACGTC AAGCATTCCC GCGCCTGTGC GGACAAGCTC
CGCAATGCCG GATGGCAGCC CAGGCATACT TTGCCGGAAG GCCTGGCGAC GACGCTGGAA
TACTTCAAGG GCATTCTGGG CAGGTAA
|
|---|
| Protein sequence | MKILVTGGAG FIGSHIVEHY QDKAEEIRVL DNLRTGYLKN LEGLRHTFIE GSICDRELVR
QAVQGVDYIF HMAALVSVPE SMSKISECID INVNGLLNVL EEASAAGVKK IVLASSAAIY
GDNPTVPKLE TMYPEPKSPY AITKLDGEYY LNMFRAEGKI NTAAVRFFNV FGPRQDPKGA
YAAAVPIFIE KAVKGEDITV YGDGSQTRDF IYVKDIVGAL TFVAEHPEVT GVFNAGYGGQ
ITIEELAQNI IKAAGSSSKV LHAPERPGDV KHSRACADKL RNAGWQPRHT LPEGLATTLE
YFKGILGR
|
|---|
| |