Gene Amuc_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_0025 
Symbol 
ID6275207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp31260 
End bp33593 
Gene Length2334 bp 
Protein Length777 aa 
Translation table11 
GC content58% 
IMG OID642612065 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_001876653 
Protein GI187734541 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.688717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCGAA GGATGATAAA AACGTCCTTC TGGCATCGTA ATAAGTCGAA AAACGCACTG 
GTTCCCTCCC ACCTCTTTCT GCTATTATCA AGTAATCCCT TCCACATGAA TATTTCACAT
CTTCTTCTCT GCACTTCCCT GCTCGCGGCT CCCGTCTGCG CGGCACAGGG CCTGACGGAA
ACTGAAACGG AAACGCCGGC CTCCTCCAGC CGCCTGCCGG CGCCCCTGGC ACAAAAAATT
GCCTCCGGAG ACTTTGATGG CCTGCAGACG GAACTGCGCT CCACCCTCCT GAAGGCTGGA
GAACAAACGA AATCCGAACA GAAACTGCTC CAGAACAAGC AGTACCGCCA TTTGCTGGAC
ATTCACGAAC TCCTGCGCGT CACGGGACCG GACAAGGTGA AAGCCGTTTT CTCCAAAAGC
GCGCAAGATG CCGCTTTCAT CAAAACCTTT CTACAGGACC CGGTGTGGAT GGAGCTTTAC
CTTGGAGCAG GCCTGATTCC GGAAAATTCA CCGGAAGGCC TTCAAATCCT CTCCGACATC
TGGAAAGCGG ACGGCAAGAG CCCGGATTTC CGGAATTACC AATCCCTGGC CACCGGGCTG
GCCTCTGTCT TTTCCACCGG CCCCATGGCG GGAAGGCTCA AAACCAACTC CGCCAACAGC
AATCCGGTGC GCCGCTACCG GATTTTCAAA AAACTGCATC AGGAAAACAG GCTGCATCCG
GGATTCATCA AACTGCGCCC ATGGGAAATG CGCTTCGTCG TGGGAAGTCC CTGGGACGAT
AAATCCTATG AATGGAGCAA TGAACACGTC AACCTCCCCT GGCGGCGATA CACGGCCGCC
TGCTGGGCCG CTCCCTATAC GGGCCACAAT TTCTTTGGCG ATACCATTCA GGGGCCCCTT
TTCTACGTGC CGTGGAGGGA TCTTAACACG ACCGCGGAAA ACACGCAGAT CATCGGCGGC
GTTTGCGGCG GCCTCTCCTA TTTTGGCACC ATGGCGGCCC AGGCCCACGG CATCCCCGCT
TATCCGGTAG GACAACCGGG CCACTGCGCG TACGCGGTGC GCGTGAAACG GGGGGAATGG
AAAGGCGGCT TCGGCGGACC AGACGGAGGC ATGCACAACC ATATCTTCGG CTCCCAGGCT
CCTACTTCCT ACCTGCTGAT GGAAAATGTC TTTGCTGACA ACGATAAGGC GGACCAGGCC
TACCTGTGGG CCGCCCAGGC CCGGCTGGAC GAGGCTTCCG GCAACAAGGA CAAGGCCATT
CAGGCATGGG AGGAAGCGCT CAGGCAAACA CCGCTGCACC CGTTCTTCCG CACGGAGCTT
CAACGCCTGC TGATGGAAAA GGAAGGCATG CAACCTGTCG ACTGGTACGT TTACGCCAAG
GACGCCCTTT CCCACTATCA GGGCAACGGC TTTGCCGCAT TCGACATCCT CAAGGACGTG
CAGAATAAAT TCCTGATGGA TATTCCGCCC GCAGACCGGA TTGCCTGGTT CCGGGACCTG
CATGAAGCCA TCGCCACCAC TCCCACATCA TGGGCGGTGA AATTCCAGCC CGTGCTGGAC
TCCCAATCTG CCTTCCTGGC AAATCCGCAG GAAAAAGCGG CCTATCTGGA AACAGTCCTC
TCCACCCACC TGAAAACGGG GGACGGCACC AACTTTGGCC AGGCGTTGGA ATGGGGCGTG
AAAAACTTTG TGGAAAACGG ACAGGCGGAC GTGTTCTCCA ACGCATTCGC CAAGGTAGCC
CAGCAAACGG GAAAAACCGG GACCTCCGGG AAAGCCCCCG ACCCCAAAAA GCTGAAGGAA
GCCTACGGCA AAGCCATCTA TGCCACGGAA ACGGCCCGCT CCATTCCGGC CTTCCAGGCC
TTGAGCAAAG CGGCGGCCTC TTTCTCCGGC GCCAATGCGA CGAACAATAC GGTCAAGGCG
TCCATTCCGC AGGGCTGGAA ACTGGTGCCC GCAGACGGCA TGGTCCGGTG CTCCACCACG
AGCCAGTGGG ACAGCCCCTG GGACCATATC AACCTGCTGC GTCCCTGCGG CGGAGCCCAG
CATACGGATA AGGAAGCCAA TCCGAACGTC ATTGTAGAAC TGAAAAACGG AGTGAACCTG
GCCGGGCTGG TAGTCACCAA GCGCGACGGC AATGAAAACC GGATGAAGAA AATGGAGGTC
TCCACGTCCA CGGACGGAGC CACCTGGTTC CCCCTGGCCG CCACGGAAAA CATGCCCAAG
GAATGGGTCA TCACCGCACC GGAAGGCACC AAAGCCAAGT GGATCAAGGT GGAAGCCAAA
AACGCACAGC CGGAATTCAT GCACCTGCGC CATATCCTCG TTTACGAAAA ATAA
 
Protein sequence
MPRRMIKTSF WHRNKSKNAL VPSHLFLLLS SNPFHMNISH LLLCTSLLAA PVCAAQGLTE 
TETETPASSS RLPAPLAQKI ASGDFDGLQT ELRSTLLKAG EQTKSEQKLL QNKQYRHLLD
IHELLRVTGP DKVKAVFSKS AQDAAFIKTF LQDPVWMELY LGAGLIPENS PEGLQILSDI
WKADGKSPDF RNYQSLATGL ASVFSTGPMA GRLKTNSANS NPVRRYRIFK KLHQENRLHP
GFIKLRPWEM RFVVGSPWDD KSYEWSNEHV NLPWRRYTAA CWAAPYTGHN FFGDTIQGPL
FYVPWRDLNT TAENTQIIGG VCGGLSYFGT MAAQAHGIPA YPVGQPGHCA YAVRVKRGEW
KGGFGGPDGG MHNHIFGSQA PTSYLLMENV FADNDKADQA YLWAAQARLD EASGNKDKAI
QAWEEALRQT PLHPFFRTEL QRLLMEKEGM QPVDWYVYAK DALSHYQGNG FAAFDILKDV
QNKFLMDIPP ADRIAWFRDL HEAIATTPTS WAVKFQPVLD SQSAFLANPQ EKAAYLETVL
STHLKTGDGT NFGQALEWGV KNFVENGQAD VFSNAFAKVA QQTGKTGTSG KAPDPKKLKE
AYGKAIYATE TARSIPAFQA LSKAAASFSG ANATNNTVKA SIPQGWKLVP ADGMVRCSTT
SQWDSPWDHI NLLRPCGGAQ HTDKEANPNV IVELKNGVNL AGLVVTKRDG NENRMKKMEV
STSTDGATWF PLAATENMPK EWVITAPEGT KAKWIKVEAK NAQPEFMHLR HILVYEK