| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Emin_1427 |
|---|
| Symbol | |
|---|
| ID | 6263549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Elusimicrobium minutum Pei191 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010644 |
|---|
| Strand | - |
|---|
| Start bp | 1515950 |
|---|
| End bp | 1520107 |
|---|
| Gene Length | 4158 bp |
|---|
| Protein Length | 1385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642611907 |
|---|
| Product | DNA-directed RNA polymerase, beta' subunit |
|---|
| Protein accession | YP_001876313 |
|---|
| Protein GI | 187251831 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000823034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAA AAACGAAAAA AACAAAAAGA TTAGATGACT TAAACTTTTT TGACTTTGAT
GCCATTAAAC TCGGCATCGC CAGCCCTGAA CAGATTATGG CCTGGTCCCA CGGCGAAGTT
AAAAAGCCCG AAACAATTAA CTACCGCACG CTTAAACCGG AGAGAGACGG CCTTTTCTGT
GAACGCATTT TCGGCCCTAC CAAAGATTAT GAATGTTCCT GCGGCAAATA CCGCTGGGTA
AAATACAAAG GCATGCAGTG CGACCGTTGC GGCGTTGAAA TTACCGAAGC TAAAGTAAGG
CGCGAGCGTA TGGGCCATTT GGAACTTGCG GTTCCCGTGG CGCACGTTTG GTTTTTACGC
AAAAATCCAT CCAGAATCGG CATCATGCTT GACATGAGAA TAACCGACCT TGAAAGGGTT
GTTTATTACG CAAGCTACGT AGTGGTTGAA GACTGTATTG ACTCCGTTAC CGGCAGAACA
GATTATAAAA AAGGCGAACT TCTTACTGAC GTCCAGGTTA GAGAAGCCCG CAAAAAACAC
GGTTCGCGCT TGAAAGTTGA TATTGGCGCT CCCGCCGTTA AAAAACTTTT GTCCGACATT
GATTTTGACA AAGAAATACC GACTCTTCAC GTTCAGTTGG CTGAAACGCA GTCCGAACTT
GAAAGAACCA AACTTATAAG ACGCATTAAA ACCATGGAAG AATTTAAAGC CAGCGGCAAC
AGGCCCGAAT GGATGATTTT ATCCGTACTG CCCGTTATTC CGCCGGATTT AAGACCTTTA
GTTCCGCTCG ACGGCGGACG TTTTGCCGCG TCTGACTTAA ATGATTTATA CAGAAGAATC
ATTAACAGAA ACAACCGTCT TAAACATATT GAAAGTTTAA GAGCGCCCGA AGTAATGATT
TATAATGAAA AAAGACTCCT TCAGGAAGCT GTTGACGCTT TAATCGAAAA CGGCGCCAGA
GGCAAGTTCT TTATAGGCGC TGGCGGCAGA CCGCTTAAAT CTTTATCCGA CGTTATTAAA
GGTAAACACG GCCGTTTCAG ACAGAACCTT TTAGGTAAAC GCGTTGACTA TTCAGGCCGT
TCTGTTATTG TGGTAGGCCC CAGCCTTAAA CTTCACCAGT GCGGTTTGCC TAAGTTAATG
GCTCTTGAAC TTTTTAAACC TTTTATCATC GGCGAACTTA TGAAAAAAGA AGGCGTTACT
CTTAAAGCCG CCAAAAAGAT GTTAGAAAGG GTAAGACCCG AAATTTGGGA TATTTTAGAA
CAGGTTACAA AAAACCATCC TGTAATGTTA AACCGCGCGC CAACGCTTCA CAGGCTTGGT
ATACAGGCTT TCGAGCCGGT TTTAATTGAA GGTAAAGCTA TTCAGCTTCA CCCGTTAACC
TGCGCCGCCT TCAACGCTGA CTTCGACGGT GACCAGATGG CTGTTCACGT TCCGTTGTCG
CTTGAAGCGC AGCTTGAGGC CCGCACATTG ATGCTTGCCA CAAACAATAT TTTATCACCC
GCTTCAGGCC GCCCTATAGC GGCGCCGTCG CATGATATTG TTATGGGTAT CAGCTTTTTA
ACAAAAGTTA AACTCAACGA CTTCGGCGAA GGGGCTGTTT TCGGCAGCAT GGAAGAAGCT
TTAATGGCGT ATGCTTACGG CAAAGTTTCG CTGCACGCAA GAATTAAAGT GCGCGGAATT
ACGGCTATTA AAGAAGACGG CATGAATGAA AAAGATTTAA AAAATGTTAA CACATGGAAA
GATTATACAA CCGTGGGTAA AATTATTTTT AATAATAACT TGCCCGAAGG CTGGCCCTAT
GTTAACGGTG CCGTAGGCAA AAAAGAACTT GCCGCTATTA TAGACGAATG CTATAAGAGC
AAAAAATACG GCAAATATGA AACTGTTCAA CTTTTAGACA GAATTATGAA GCTTGGTTAC
AATTACGCCA CGCGTTCAGG TCTTTCAATC TCTATCGCTG ATATGATTGT TCCCGCGGCG
AAACAGAAAT ACATTGACGC GGCTAAAAAG AGAATTAAAG AAATTCAGGG CCAGGCCGAA
GCCGGTATCA TCACCGAAGG CGAAAGATAC AATAAAGTTA TTGATATCTG GACCCGCGTT
ACCGACGACG TTGCTGTAGA ACAGTTTAAA GAAATGAAAA AGTTTGAAGA GGCTCCTTAT
TCAGGTGAAG GGCAGAGGTT TAACTCTGTT TTCTTAATGG CTGACTCAGG GGCCAGAGGT
TCCAGACAAC AGGTTAGACA GCTTGCCGGC ATGAGAGGTT TGATGGCTAA ACCGCAAAAG
AAACTTACCG GCGGTCAGGG CGAAATTATT GAATCCCCCA TTACCTCAAA CTTTAGAGAG
GGCTTGTCCG TATTGGAATA CTTTATTTCC ACTCACGGTG GCCGTAAAGG TTTGTCGGAC
ACAGCTCTTA AAACAGCTGA AGCCGGTTAC TTAACCCGCC GTCTTATTGA CGTGGCGCAC
AATCTTGTGG TTATGGAAGA AGACTGCGGC ACAACAAACG GCGTTGTGGT TTCCTCACTT
ATGAGCGGCG AGGAAGTTGT TGAACCTATT GAAGAAAGAA TTTTAGGCCG CACCAGCTTG
GAAGACGTTA TTGTAAAAAT CAAAAAAGCT GACGGCAAAG AAGAAGAAAA AACAATTATT
AAAGAAGGCG ATTCTATTAC GTTAGAACAA TCTAAGCTTG TTAAAAAATA CGGCGTGCAA
AACCTGCGTA TCCGTTCAGT GCTTACCTGC GAATCCAAAA ACGGCGTTTG CGGTAAATGT
TACGGCGTGA GCTTGGTTTC AGGCAATATT TCTAACGTGG GCGATTCCGT AGGTATTATC
GCGGCTCAGT CAATCGGCGA GCCGGGTACG CAGCTTACGC TCAGAACCTT CCACATCGGC
GGCGCGGCTT CACGTATGTT AAGCCAGTCA CAAGCCGTTG CCGAACTCGG CGGTAAAGTA
ACTTTTAAAG ATATTAAAGT TATTACCAAC AGGTTTGATA ATAAAATTTG TATTTCAAGA
AACGGGGCTA TCTTTGTAGA GGCCGCAAAT GGTACAATTA AAGAATACAA GATTCAATAC
GGCGCCACAT TGCATATTGC CGATAAAGTG ACTGTAGAAA AAGGCACTTT AATGGCAGAA
TGGGATCCGC ACTCAATACC CGTGCTTTCC GAAACGGAAG GTACAGCCAG GCTTACTGAC
GTTTCCGAAG GTATTACCTT ACAAGAAGAA AGAAACAAAG TTACCGGTGT TATTGAAAGA
AAAATCACTG CCAGCCGTAT GGGCAAAAAG AACCCCAGAA TCGTTATCGA AGGTAAAGGC
GGCAAAAAAG TAAGTTTGCC GTTGCCTGTA GATACAATTT TATTAGTTGA AAACGGTGAA
GATGTTCTTG CCGGCGACAT TTTGGCTAAA ATCGCCAAAG CGTCAGGCGG TACAAAGGAT
ATCACCAGCG GCCTTCCCAG AATCGCGGAG CTTTTTGAAG CCCGCAAGCC GAGGAACGCG
GCTATTATGT CTGAGTTCGC CGGTGTAGTC AGCTTAGAAA CATCACCGAA AGGTTTGGTT
GAAATCGTTG TAAGAAGCGA AGAAACCGGC CAGGTTAAAC AATACGCGGT TCCCCAAGGT
AAACATTTAG TTGTTTACGA AGGCGACCAT GTGGGCGTAG GCGAAGCTCT AACAGACGGC
GCCATTGACC CGCACGACGT ATTACGCGTA AAAGGTATTA AAGAAGTACA GGAATTTTTA
CTTAACGCTA TTCAGGAAGT TTACCGCTTA CAGGGCGTTA CGATTAACGA CAGACATATT
GAAGTTATTG TCCGCCAGAT GTTGGGCAAC GTAAAAATCG TTGACGCTGG CGACACGCCT
TTATTAAAAG GCGAAATTGT AAGCCGCGCG ACATTGTTAA AACATAATGC GCAGGCGGAA
AAAGAAGGCA AAAAGATTGC GGTTGGAGAC CCGATACTTT TAGGTATCAG CAAGGCTTCA
CTCGCGTCTG ATTCTTTCAT CTCCGCGGCC AGCTTCCAAG AAACGACCAA AGTCTTAACA
GACGCGGCTA TCACGGGCCA GGTAGACACA TTACAAGGCT TAAAAGAGAA CGTTATCGTG
GGCCATTTAA TACCTGCAGG TACGGGTATT TCCGCGAGAG AATTCACAAA AGAATTCGAA
GCGGCTAAAA AGAAGTAA
|
|---|
| Protein sequence | MSEKTKKTKR LDDLNFFDFD AIKLGIASPE QIMAWSHGEV KKPETINYRT LKPERDGLFC
ERIFGPTKDY ECSCGKYRWV KYKGMQCDRC GVEITEAKVR RERMGHLELA VPVAHVWFLR
KNPSRIGIML DMRITDLERV VYYASYVVVE DCIDSVTGRT DYKKGELLTD VQVREARKKH
GSRLKVDIGA PAVKKLLSDI DFDKEIPTLH VQLAETQSEL ERTKLIRRIK TMEEFKASGN
RPEWMILSVL PVIPPDLRPL VPLDGGRFAA SDLNDLYRRI INRNNRLKHI ESLRAPEVMI
YNEKRLLQEA VDALIENGAR GKFFIGAGGR PLKSLSDVIK GKHGRFRQNL LGKRVDYSGR
SVIVVGPSLK LHQCGLPKLM ALELFKPFII GELMKKEGVT LKAAKKMLER VRPEIWDILE
QVTKNHPVML NRAPTLHRLG IQAFEPVLIE GKAIQLHPLT CAAFNADFDG DQMAVHVPLS
LEAQLEARTL MLATNNILSP ASGRPIAAPS HDIVMGISFL TKVKLNDFGE GAVFGSMEEA
LMAYAYGKVS LHARIKVRGI TAIKEDGMNE KDLKNVNTWK DYTTVGKIIF NNNLPEGWPY
VNGAVGKKEL AAIIDECYKS KKYGKYETVQ LLDRIMKLGY NYATRSGLSI SIADMIVPAA
KQKYIDAAKK RIKEIQGQAE AGIITEGERY NKVIDIWTRV TDDVAVEQFK EMKKFEEAPY
SGEGQRFNSV FLMADSGARG SRQQVRQLAG MRGLMAKPQK KLTGGQGEII ESPITSNFRE
GLSVLEYFIS THGGRKGLSD TALKTAEAGY LTRRLIDVAH NLVVMEEDCG TTNGVVVSSL
MSGEEVVEPI EERILGRTSL EDVIVKIKKA DGKEEEKTII KEGDSITLEQ SKLVKKYGVQ
NLRIRSVLTC ESKNGVCGKC YGVSLVSGNI SNVGDSVGII AAQSIGEPGT QLTLRTFHIG
GAASRMLSQS QAVAELGGKV TFKDIKVITN RFDNKICISR NGAIFVEAAN GTIKEYKIQY
GATLHIADKV TVEKGTLMAE WDPHSIPVLS ETEGTARLTD VSEGITLQEE RNKVTGVIER
KITASRMGKK NPRIVIEGKG GKKVSLPLPV DTILLVENGE DVLAGDILAK IAKASGGTKD
ITSGLPRIAE LFEARKPRNA AIMSEFAGVV SLETSPKGLV EIVVRSEETG QVKQYAVPQG
KHLVVYEGDH VGVGEALTDG AIDPHDVLRV KGIKEVQEFL LNAIQEVYRL QGVTINDRHI
EVIVRQMLGN VKIVDAGDTP LLKGEIVSRA TLLKHNAQAE KEGKKIAVGD PILLGISKAS
LASDSFISAA SFQETTKVLT DAAITGQVDT LQGLKENVIV GHLIPAGTGI SAREFTKEFE
AAKKK
|
|---|
| |