| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_7534 |
|---|
| Symbol | |
|---|
| ID | 6249118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010627 |
|---|
| Strand | - |
|---|
| Start bp | 306090 |
|---|
| End bp | 308663 |
|---|
| Gene Length | 2574 bp |
|---|
| Protein Length | 857 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642599114 |
|---|
| Product | CagE TrbE VirB component of type IV transporter system |
|---|
| Protein accession | YP_001863520 |
|---|
| Protein GI | 186474549 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0339872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0463504 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAGCA GACCAACCGT CTCGAGCGAG ATCCTCGGCG CGATCGGCGC CGTCGAAGAC
TGGATGCCGA GGTTCAGGCA TCCGGTCACA AGGCATGTGC AGCACATCGA CGGAAACCGT
TTCATGGTGA CGCTTGCGCT GCACGGTGTG CCGTTCGAGG TATTCGAAAA CAAGGTGCTT
GACCGCAAGT TCGACCGCGA CACGGAGATC TTGAGCAAAC TGGGCCGCGA CCATGGCGGG
CGCCTTGGTT ACCACGGCGT TTTCATGCGA CGGCGCGTGA ACGCCGATCA CGAGTACCGT
TTCGACAGCC CCTTCATGAA CTGGTTTTCG ACGCAGCATG GCGGGCAGTT CAGGGGTGGC
CGGTTCTTTG GAAACCGCTA TTACTTTTCG ATCATCCTGA AGTACGAGGA TTTCGAGGAT
GGGCTGAAGG AAATCGCGTC GCTCGCGCAG CAGGCGCTGC AACAGTTTGC GGACTACGAG
GCCGAACTGC TCGCGGTATA TGAGCGCACG CATATGAACG GCACAAAGAT GCTGTTTTCG
CAGCTGTATG GCTTCGTCAG TTATCTCGTG AACGGGGTGA CGGGTGATCT GCCGGTCGCA
GCAGAGCCAG GTGTTGACGT CATTCCGTCC AGTTATCTTC GCTTCGGCTA CGACACACAC
GCGATCGACG GGCCGGGCGT GCCGGACCAC CGGCGCTTCT TCACCTGTCG CGATCTGCGC
AGCTTTCCGG AGAAGCCGGG CTTCGGCCAG CTCGATCCGT TGCTCTCACT GCCGATCGAA
TTCACGGTTG TGCATTCCTT TAACTGCATG ACGGGTTTCG AATCAAACCG CACGATCGAC
TCGGCAATCA ACAAACTGGA GTCCGCCGGC GACAAGGCGA AGCATCAGGT CAGGGAACTG
CGCGATGCGC AGGGTTACGT CAACACGGGC GAGCTGTCGT TCGGCGAGTA CCATGGTGCG
GCCGTGATCT ATGGCGCAAG TACACAGGAG GCGCTGGAAA ACGGGATCCT GTTCGCATCC
CGATCGCTGA ACGAGTGCGG TGTCGACTGG GCGCTCGCGA CCGGTTCGGC GCCCTTCACG
TATTTTTCGC AGGTCCCGGG CGCGAAGGTC AAGCCACGGC CCAAGGTCCA GTCGTCGCGC
AACTTTGCGT CGATGTTCAC CTGCCACGAC TATTCGGCCG GCAAGGCCGA GGGCAACCCT
ATCGGCGACG GCTCAGCTGT CATCCCATTC CGTTCCGCAT CGGGCATCTA TTACTTCAGC
CCGCATGCGA GCCGGCAGGG CGACGTCAAC GTGGCGGAGA AGCTGGCCGC GCACGTGAAG
CTGCAAGGCA CCACCGGTGC CGGCAAGTCG ACTGTCGCGA CCGCCATCGC TGGCATGCTG
TCCCGGTTCG GGCAGCTGCT GTTCGTGCTG GACAAGGGGC GAGGCTGGGA AGTGTTCATC
CGCGCGATGC GCGGCGCCTA CGTCCATCTG GAGAAAGGCA AACCGACTGG CTGGGCGCCG
TTCGAGCTGG CCGACACGGC TGAGAATCGC GAGTTTCTGT ACGGGCTGGT CGAGCTTTGC
GGACGCAGAA ACGGCGTTGA TCATCAGGGC AAATCCGTCA AGATCGATCT GACTGCCGCC
GAGAAGATCC AGTGCCGCAA CGCCGTCGAC GCGGTGATGG GAATCGAGGA CGTGCGCCTG
CGCCGCTTCA GCCTGCTGCT GGACAGCATT CCGGATGAGG GCGATGACAG TCTGCGCCAG
CGTCTGTCGC TCTGGTGCAA ATCCGAGAAC GGCAGGTTCT GGTGGGTGTT CGACAACCCG
CCGAACCTGG CGCTGAACAT GACGGAGCAG CGCTGGATCG GCTTTGATGT CGAGGCGTTC
CTCGTCGAAA ACTACGAACC GTCCGAGCCG GCGTTTGCCT GGCTTTTCCA CCTCAAGAAG
CTTATGCGAG GTGAGGGCCG GCTCATGCAG ACCGTGATGG AAGAATACTG GATGCCGATC
CGCTTCCGCA CGATCCGCGA GCAGATCGAG GAAACGCTCG CGAGCGGCCG CAAGGAAGGG
GAGTTCATCA CGCTCATCAC CCAGCAGCCC GAGCAGGGCC AGAAGGCCGC CGACCTGTAC
CCGGCGCTGC GCAGCCTGGT TGCGACCAAC CTGTATCTGG CCGATCCGGC GGCGGAAGAG
GAGGCGTACG TCCGCGACGG CATGACGCGC AAGGAATTCA CGGAGTTCAG GAAGCTCACG
CCCTCGTCGC GCCGGTTCCT CATCAAGCAG GGCAACCAGT CGGCGTTCGC GGTTTTTGAC
CTCAGCGGCA TGGACGACGC GATCGCCGTG TTTTCGGGTG ATCGCGAGAA CGTATTGATC
TGCGACACGG TGCGCGCCGA ACTGGGGGAA GACCCGGACG TATGGCTACC GGTCTACCTG
GAACGTGTCT TCGAACGCAA ACTGCGCACG CGCCTCGCGG CGAAGCACGG CGCCGATGAG
CGGCTGTGGG CAGACGAGCT GCGGCGTGGC CTCGAGTACA AGCGCGCCGA GCTCGCCCGC
ATCTATGCGT CGGCACGCGC CGTCGACGCG GGTAACGAAG CTGTCACTGT CTGA
|
|---|
| Protein sequence | MGSRPTVSSE ILGAIGAVED WMPRFRHPVT RHVQHIDGNR FMVTLALHGV PFEVFENKVL
DRKFDRDTEI LSKLGRDHGG RLGYHGVFMR RRVNADHEYR FDSPFMNWFS TQHGGQFRGG
RFFGNRYYFS IILKYEDFED GLKEIASLAQ QALQQFADYE AELLAVYERT HMNGTKMLFS
QLYGFVSYLV NGVTGDLPVA AEPGVDVIPS SYLRFGYDTH AIDGPGVPDH RRFFTCRDLR
SFPEKPGFGQ LDPLLSLPIE FTVVHSFNCM TGFESNRTID SAINKLESAG DKAKHQVREL
RDAQGYVNTG ELSFGEYHGA AVIYGASTQE ALENGILFAS RSLNECGVDW ALATGSAPFT
YFSQVPGAKV KPRPKVQSSR NFASMFTCHD YSAGKAEGNP IGDGSAVIPF RSASGIYYFS
PHASRQGDVN VAEKLAAHVK LQGTTGAGKS TVATAIAGML SRFGQLLFVL DKGRGWEVFI
RAMRGAYVHL EKGKPTGWAP FELADTAENR EFLYGLVELC GRRNGVDHQG KSVKIDLTAA
EKIQCRNAVD AVMGIEDVRL RRFSLLLDSI PDEGDDSLRQ RLSLWCKSEN GRFWWVFDNP
PNLALNMTEQ RWIGFDVEAF LVENYEPSEP AFAWLFHLKK LMRGEGRLMQ TVMEEYWMPI
RFRTIREQIE ETLASGRKEG EFITLITQQP EQGQKAADLY PALRSLVATN LYLADPAAEE
EAYVRDGMTR KEFTEFRKLT PSSRRFLIKQ GNQSAFAVFD LSGMDDAIAV FSGDRENVLI
CDTVRAELGE DPDVWLPVYL ERVFERKLRT RLAAKHGADE RLWADELRRG LEYKRAELAR
IYASARAVDA GNEAVTV
|
|---|
| |