| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_7365 |
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| Symbol | |
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| ID | 6248964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010627 |
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| Strand | + |
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| Start bp | 140978 |
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| End bp | 141478 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642598989 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001863395 |
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| Protein GI | 186474424 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.22797 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCCAAACT GCAGCGGCTG TCGGGCCTAC ATGTCTGTAA CAGGCAAGAA AACAGGGCAA
TTCCAAGGAG AAGGTACGAA CGCCCAACAC GCAGACCAGA TCCGAGTCCT TGCTTTCACG
ATGGGAGTCA CATCGCCTCG TGATGCCGAT ACCGGGCAAG CTACGGGCAA GCGTCGGTTC
CAGCCAATAA CCATTATCAA GGAGTGGGGC GCAGCTTCCC CCCAAGGCCT CGAGGCCTGC
GCAACCAACG AAGATCTTAG TACGGTTAAA ATCGAGTTCA TAAAAATGAA AGCAACCGGC
GAGGAATACG TTTCCCAGAC CGTACACCTC ACCGATGCAA CGATAGTTGA CATTAGTCGA
TTCATTGGCG ACGCCGAGGC AGCAGTAGAC TTACAAGTCG GTTTTACGGA TGCTGGAGGA
TTGGAAAGGT GGTCGTTCAT GTTCCAAAAG ATTGAAGTCG ACGACGCGGA CGGAAAGACC
TCGTTCGTCG ATAAATGGTA G
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| Protein sequence | MPNCSGCRAY MSVTGKKTGQ FQGEGTNAQH ADQIRVLAFT MGVTSPRDAD TGQATGKRRF
QPITIIKEWG AASPQGLEAC ATNEDLSTVK IEFIKMKATG EEYVSQTVHL TDATIVDISR
FIGDAEAAVD LQVGFTDAGG LERWSFMFQK IEVDDADGKT SFVDKW
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