| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_7217 |
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| Symbol | |
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| ID | 6248726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010625 |
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| Strand | - |
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| Start bp | 1875112 |
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| End bp | 1878054 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642598861 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001863263 |
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| Protein GI | 186471945 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.249898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTCGA TCATCGCATC ACTGCAACGC GCTTTTGAAT ACCTGTCGCA GGATCTGCTG
CGACGCGTAG AGATACGCTA CCGGCTGATG ACCGCGTTCA TCCTGCTGTC ATTGCTGCCC
GTTCTCATTT CCGGCTACAT ATCGTACGCG GAGTCGACGG CGGCCATCAA AGAAAAAGCC
GAGATCTTTT CGAAGGAAGT GGTCAAGCAG GTGTCGCGAA ACGTCGTGCT GCGCATGGAG
CAGGTCGAGA CGGAGAGCAG CCTGCTCGTG CTGTCCGATC AGGTTCAGGC AGCGCTGATG
AAAGTCGAAA GCGGCAGCCC GAAGGAACAG AACGAAGCGC GTCAGGACAT GACGCGGCTG
CTTCTGGACC ACTACGGCTC AGTCGATTTC ATCAACGAAA AGTATCTGCT CGACCAGCAC
GACCGGGTCA TGGACACGCA GGCGTTCGCG CAACTGACAC GCGGCGTGAT GCGGTTCGTC
AGGCAGGCGC TCCAGCACAA CGGACGCCCG TACTGGGGCA GCTACGACAA CGGCGTGGGC
CAGCAGAACC TGGGGATGGT GCGCGCGGTT ATCGGCAAGA GCAACAACCG GCAGCTTGGC
CATCTGGTTC TGGTGATCCG TCCCGAACAC TTCTCGACGA TTTTCAACGA CGTTGCATTG
GGCACGGGCA CGCAGATCTA TGTGCTCGAC ACGAGCAACA ACAAGCTGAT CGTGCGCGCC
GACGACACGC CCGCCGGCGC CGACGCGGCG GCCGAGCCCG GCCTGATCGA CAAGATTACG
CACAACAACG AGACGCTCGG CGAGCCGAAT GGCTTCGTCA GCTTCGAAGG CAAGAACCGC
GCGGGCTACT TCGCGGCGTA TACACGGATT CCCGGCACGA CATGGTTCGT CGTCAGCACG
ATACCCGAGA AGAAGCTGAC GGCCGAGGCG CAATCCGTGC GCAACCAGAT GGTGCTGGTC
GGCATTTCGG GCTTCCTGCT TTCCATCTTC TTTGCCTACT TCATCTCGCA CAGCATTTCG
GCGCCGCTGA AGAACCTCGT GCGCAAGATG CACGACACGG GCAGCGATGC GGGCGCCGAA
TCCGAAGACC TCGCGCAAGC GCCTGTCGGC AGCGACGGCC AGGACGAGCT GGGCAGGCTC
GAACAGCGCT TCGAAAGAAT GCGCGCGGCA ATCAGGCAGA AAATCCAGAA GATCAACGAG
ATCAACGCAT CGCTCGAACA GACGGTGGCC GAGCGCACTG CGGAACTCGT CAGCCGTGAG
CTGGAGTCGC GGACGCTGAT CGAAAATTCG CCGGACACGA TCACGCGCTA CGACCGCGAC
CTGCGCCGCA CGTATGCGAA CCCCGCGTTT TGTTCGTCGG CGGGACGCAG TCTTGGCGAA
GCGCTCGGCA AGCGGCCGTC GGAGATACCC GGCGGAGCGA ACGCGCTGAT CTACGAGCGC
AAGATCGGCG AAGTGATTGC GAGCGGCAAG AGCGGGCAGT TCGAATTGCG CTGGCTCAGC
AAGGACGGAC AGGAGCAGTG CTCGCATATT CGCCTCACGC CTGAGATCGA TCCGTCGGGC
AAGGTGAACT CCGTGCTCGC GGTCGGCCGC GACCTGTCGG ACCGGATGGC GTTCGAAGCG
GCAATCTGGC AACAGGCCAA CTTCGATACG CTGACACAAC TGCCGAACCG CCAGATGTTC
CAGAATCGTC TCGAACAGGA AGCGAAAGTC GCGCAGCGTT CCGGCCACCG GATGGCCCTG
ATGCTGATCG ATCTGGATCG CTTCAAGGAA GTCAACGACT CGTTGGGACA CGATACGGGC
GACACGCTGC TGATCGAAGC TGCGCGGCGC ATCACCTCGT GCGTGCGTGA ATCGGATACC
GTGGCGCGTC TGGGCGGCGA CGAGTTCACC GTGATCCTGC CGGACATCGA CAACTGCGGC
AGTATCGAAC GGATTGCACG AACGATCATC GAGACCCTGT CCGAGCCGTT CGCGCTCGGC
CCGGACGAAG CGTTCATTTC GGCGAGCATC GGCGTCACGG TATATCCGGA CGATGCACGC
GAACTCGACG TGCTCTTCAA GAACGCCGAC CAGGCGATGT ACGCGGCCAA GAACGCCGGA
CGCAATCGCC TGAACTACTT CACGCCGGAC CTTCAGGTCG CAGCGGAAAA GCGCCTGCGC
CTGACAAGCG ATCTGCGCAC CGCTTTGCCG CACGATCAAT TCCGGCTCTA CTACCAGCCG
ATCGTCGATC TGTCGACGGG CGACATTTTC AAGGCCGAGG CGCTGATCCG CTGGCTGCAT
CCCGAGCGCG GCATGGTCAG CCCGCTGGAC TTCATCCCCC TCGCGGAAGA CACGGGCCTG
ATCGTGCCGA TCGGCGAGTG GGTGTTCCGC CAGGCCGTGC AGCAGGCGAA GCTGTGGCGC
CAACGCTTCC ATCCGTCGTT CCAGATCAGC GTGAACATGT CGCCCGTGCA GATTCGCCAG
GACAATCAGC TCGGCGCGCT ATGGTCCGAC TACCTGACCC GCGAAGGCAT GCCGGGACAG
AGCATCGCGA TCGAAATCAC GGAAGGCCTG TTGCTGCACG CCGATCTGAA TATCGACGCG
CGGCTCGCGA CGTTCCGGCA CGCGGGCATC CGCATTTCCA TCGACGACTT CGGCACGGGC
TACTCGTCGC TGGCTTACCT GAAACGCTTT GACATCGACT TCCTGAAGAT CGACCGGTCT
TTCGTGCAGA ACCTGGGCTT CGACGCGGAC AATCAGGCGC TATGCGAGGC GATGGTCGTG
CTCGCGCACA AGCTCGGACT GAAGGTAATC GCGGAAGGCG TCGAGACCGT CGAGCAGCGC
GACTTTCTGA CGGCTGTCGG CTGCGACTTC GCGCAGGGCT TCCTGTATTC GCAGCCCGTC
CCGCCTGACC AGTTCGAGAC GCTCGTCTGG CCGCGTATCG AGGTCAGCCC GGAAAGCATC
TGA
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| Protein sequence | MSSIIASLQR AFEYLSQDLL RRVEIRYRLM TAFILLSLLP VLISGYISYA ESTAAIKEKA
EIFSKEVVKQ VSRNVVLRME QVETESSLLV LSDQVQAALM KVESGSPKEQ NEARQDMTRL
LLDHYGSVDF INEKYLLDQH DRVMDTQAFA QLTRGVMRFV RQALQHNGRP YWGSYDNGVG
QQNLGMVRAV IGKSNNRQLG HLVLVIRPEH FSTIFNDVAL GTGTQIYVLD TSNNKLIVRA
DDTPAGADAA AEPGLIDKIT HNNETLGEPN GFVSFEGKNR AGYFAAYTRI PGTTWFVVST
IPEKKLTAEA QSVRNQMVLV GISGFLLSIF FAYFISHSIS APLKNLVRKM HDTGSDAGAE
SEDLAQAPVG SDGQDELGRL EQRFERMRAA IRQKIQKINE INASLEQTVA ERTAELVSRE
LESRTLIENS PDTITRYDRD LRRTYANPAF CSSAGRSLGE ALGKRPSEIP GGANALIYER
KIGEVIASGK SGQFELRWLS KDGQEQCSHI RLTPEIDPSG KVNSVLAVGR DLSDRMAFEA
AIWQQANFDT LTQLPNRQMF QNRLEQEAKV AQRSGHRMAL MLIDLDRFKE VNDSLGHDTG
DTLLIEAARR ITSCVRESDT VARLGGDEFT VILPDIDNCG SIERIARTII ETLSEPFALG
PDEAFISASI GVTVYPDDAR ELDVLFKNAD QAMYAAKNAG RNRLNYFTPD LQVAAEKRLR
LTSDLRTALP HDQFRLYYQP IVDLSTGDIF KAEALIRWLH PERGMVSPLD FIPLAEDTGL
IVPIGEWVFR QAVQQAKLWR QRFHPSFQIS VNMSPVQIRQ DNQLGALWSD YLTREGMPGQ
SIAIEITEGL LLHADLNIDA RLATFRHAGI RISIDDFGTG YSSLAYLKRF DIDFLKIDRS
FVQNLGFDAD NQALCEAMVV LAHKLGLKVI AEGVETVEQR DFLTAVGCDF AQGFLYSQPV
PPDQFETLVW PRIEVSPESI
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