| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_7008 |
|---|
| Symbol | |
|---|
| ID | 6248523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 1666354 |
|---|
| End bp | 1667835 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642598658 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001863060 |
|---|
| Protein GI | 186471742 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.130004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTACAT TGCTGCCAGT TGAACGCCGC GAGCGCCATT CAGTCGTGCG CGTTGCGCGC
GCCGTGGCGT TGGCGGCAGG CGTCGTGCTC GTCGCCGCGT GCACGGTCGG CCCGAATTTT
TCGCGGCCGG CCACGCCGCG CGTGCAACGC TATGACGCGT CGGACGCATT GGGCATGGCA
TCTGGGGGAC AGCCGCAGAG CTTGTCGCCT GCTGTCCAGA TGCGCGACGA CTGGTGGACG
TCATTCGGCT GCCGCGCGAT CGACATGGCC GTCGATGAGG CGCTGACGGG CAACGTGACG
CTGGAGCACG GGGAGGCGAC CTTGCGCCGA AGCGAATACC TGCTGCGCGC AGGCGCGGGC
GTTTTTTTTC CTCAAGTCGA CGCACGGGGC GACGCTTCCC GTCAGCGGTT TTCGCCGCTT
CGCACGGGCG TCGACGCGCC AGCGTCGATC TTCAATCTGT TTACGCTGTC GGCCACCGTC
AGTTACACGC TCGACATATG GGGCGGCGAG CGCAGGCAGG TCGAGGCGCT CGCCGCACAA
GCGGAAGCGC AACGCTACAC GCTCGTCGCC ACCTACTTGA CGCTAGCCGC GAACGTCGTC
AATGCGATGA TCGCCCGGGC TGCCTATAGC GACGAAATCG CCGCAACGCG TGAAATGGTC
GAACTCGTGC GCGAACAGGT CCACATCACG CAAGCGCAGG TTGCGGCGGG CGCGAGCGCG
TGGTCGGCCG TGTTGTCGCT TCAGAACGAA CTCGCGACGC TCGAAGCGTC GTTGCCGGGA
CTCGAGCAGA AGCGCATCGA AACTGAGCAT CTGCTTGCGC TGCTCGCTGG GATGTATCCC
GAGCAGTGGA GCGGGCCTGC GGTGTCCCTG GCGGAGATCG CGTTGCCCGG CGTATTGCCG
CAGACGCTGC CATCTTCGCT AGTCCGGCGA CGCCCCGACA TCCTGCAGGC GGAAGCCGTG
CTGCACGTCG CAAGTGCGGA GATCGGCGTG GCCACGGCGG CGCTGTTTCC TCAGATCGCG
TTGTCCGCTT CGGGTGGTGT CGAAAGTGCC GTGCTTCATT CACTCGGAAC ACCGGCCGGT
CAAGCGTGGA GCGTCGCCGC GGGCGTGACG GCTCCCGTGT TTCATGGCGG CGCATTGTGG
TTCCAGCGCA AGGCAGCCCT GGAAGCCTAT AACGAATCGA GCGCCGCGTA TCGCGAGGTG
GTGCTCGCGG CGTTTGCCCA GGTCGCAGAC GCGCTGCGGG CGCTCGAACA CGATTCGCAG
ACGGTCGCGG CACAGACCCG CGCGGTGCAG GCCGCAGGCG AGGCGCTGCA GCTGATCAAG
GAGGCGTATC GCGCGGGGAC GGTTGGCTAT CTGCAGATAC TCGTCGCCGA TGGCCAGTAT
CATCAGGCCC GGATCGCGTG GCTGCAGGCC ATCGCGCAGC GCCTGCAGGA CACGGTCGCA
CTCTATGCGG CGCTGGGCGG CGGTCTGATT GCCGATTCAT GA
|
|---|
| Protein sequence | MCTLLPVERR ERHSVVRVAR AVALAAGVVL VAACTVGPNF SRPATPRVQR YDASDALGMA
SGGQPQSLSP AVQMRDDWWT SFGCRAIDMA VDEALTGNVT LEHGEATLRR SEYLLRAGAG
VFFPQVDARG DASRQRFSPL RTGVDAPASI FNLFTLSATV SYTLDIWGGE RRQVEALAAQ
AEAQRYTLVA TYLTLAANVV NAMIARAAYS DEIAATREMV ELVREQVHIT QAQVAAGASA
WSAVLSLQNE LATLEASLPG LEQKRIETEH LLALLAGMYP EQWSGPAVSL AEIALPGVLP
QTLPSSLVRR RPDILQAEAV LHVASAEIGV ATAALFPQIA LSASGGVESA VLHSLGTPAG
QAWSVAAGVT APVFHGGALW FQRKAALEAY NESSAAYREV VLAAFAQVAD ALRALEHDSQ
TVAAQTRAVQ AAGEALQLIK EAYRAGTVGY LQILVADGQY HQARIAWLQA IAQRLQDTVA
LYAALGGGLI ADS
|
|---|
| |