| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6993 |
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| Symbol | |
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| ID | 6248508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010625 |
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| Strand | + |
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| Start bp | 1644252 |
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| End bp | 1646147 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642598643 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001863045 |
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| Protein GI | 186471727 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.800495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTT TCTCCGCGAC GCCCGCATCA GAGGCGCAAC TCGTCGCCCC GGGCTTCGGC
CATGAGACCG TGCTCGCGCG CGGCCTCGTG CGCCTCATGC ACGGGATCGA ATACCTGTGT
GCAGCCGTGC TCGCGGCCGA TGTGCTCGTG GTGTTCCTCT CCGTGATCTA CCGCTATTTC
CTGCACGATC CATTCGACTG GGCCGAGGAA GTCGCCGGAG CGCTGATGGT CGTACTGGTG
TTCTTCGGCG CCGCCACGGT GCTTGCGCGC AGCCAGCACG TCGGCGTCGA CCTGTTTCGC
GGCATGCTGC CCAGGCGCTG GCAGCCCGCG CTCGTTCATC TGGGACACTG GGTCATCGCG
GGCGTCGCGG GGAATCTGTG CGTGTCGTCG TGCCTGCTGC TAGTCGATTC CTACGGCCAG
ATGACACCGA GCGGCCTCCC CGCGTGGATC AAAGTGTATC CGCTCGTCAT CGGCAGCGTG
TTCATGGCAG TGTTCGCGCT CGCCAACGCG CTCAACGGCG CGCGCAGGAC TGTGCTCGGC
ACATTGATCG GCTGCGTGTT GCTCGCGGCG GCCGTGTTCG GGTGGAACGC GTTCGTGCCC
GGTCACGCGA TCAAGCCCGG CATCCTGCTG ATGGCCGGAT TCATCGGCGG ACTCGTGCTC
GGCGTGCCGG TCGGCTTCGT GCTCGCGTTC TCGGCGCTGC TGTACTTCCT CGCGGAACCG
TCCCTGCCGA TGCTCGTCTA CTCGCAGCAA GTGATGGCGG GCACCGACCA CTTCGTGCTG
CTCGCGATTC CGTTCTTCGT GCTCGCCGGA CTACTGATGG AAACCAACGG CATGTCGTCC
CGCCTGATCG AACTGCTGCT GAGGATTTTC GGGCGCGTGC GCGGCGGCCT CGGCCTCATC
ACGATCATGG CGACGGCGTT CTTCTCGGGC GTGTCCGGTT CAAAGCTTGC CGATATCGCG
GCGGTCGGCG GTGTCGTGAT GCCGGCTGTG CGCCAGAGCA AGGAAGATCC GAACGAAGCC
GCAGCGCTGC TCGCCTGCAG CGCGGTGATG GCGGAAACCA TTCCTCCGTG CGTGAACATG
ATCATCATGG GCTTCGTCGC GAACATTTCG ATCGCGGGGC TGTTCCTCGC GGGCGTCGTG
CCCGCGGCCG TGCTTGCCGC GGCGCTGGCG ATCGTCGCGG TGATTTTCGG GCGCCGCATA
AATCTCGCCG ATGCGCTCAC CAATCCGCGC GCATGGATGC CGCTGCTCGG CGGCGCGCTG
GTCGCGCTCG TCATGATCAG CATGATCGGC AAGGGCGTGA CGTCGGGCAT CGCGACGTCG
ACGGAAGTGT CCGCGTTCGC CGTCGTCTAT GCGCTTATCG TCGGCTGGCT GGCGTTTCGC
GAACTGACGC CGCAATCGGT CACACGCGTG TTCGTGCGCT CGGCATCGAT GGCGAGCAGC
ATTCTGTTCA TCGTCGCGGC GGCCTCCAGC GTATCGTTCG CGCTGACCGT CGAGCAGATT
CCCGCGCTCG TTTCCGATTC GATGATCGCC TTCGCGCATC AATATGGACC GACGATGTTC
CTGCTGCTGT CCGTGCTGAT CATGATCGTG TTCGGCGCGG TGCTGGAAGG CGCGCCCGCG
CTCATCATCT TTGGGCCCCT CCTCACCCCG ATCGCCACGC AACTCGGCAT CAACCCGCTG
CATTTCGGCA CGGTGATTGT CGTCGCGATG GGCATGGGTT TGTTCGCGCC GCCGGTCGGG
CTGGGCCTGT TCGCGACCTG CGCCATCACC GGCACGGAAA TGAAGGCAGT AGCGCGACCT
ATGCTCAAAT ACCTGCTGGT GCTGTGCATC GCACTGGTGG TGCTGATTCT GGTGCCGTCT
TTTTCGTTGT GGTTGCCGAC CCGGCTCGGC CTGTAG
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| Protein sequence | MTTFSATPAS EAQLVAPGFG HETVLARGLV RLMHGIEYLC AAVLAADVLV VFLSVIYRYF
LHDPFDWAEE VAGALMVVLV FFGAATVLAR SQHVGVDLFR GMLPRRWQPA LVHLGHWVIA
GVAGNLCVSS CLLLVDSYGQ MTPSGLPAWI KVYPLVIGSV FMAVFALANA LNGARRTVLG
TLIGCVLLAA AVFGWNAFVP GHAIKPGILL MAGFIGGLVL GVPVGFVLAF SALLYFLAEP
SLPMLVYSQQ VMAGTDHFVL LAIPFFVLAG LLMETNGMSS RLIELLLRIF GRVRGGLGLI
TIMATAFFSG VSGSKLADIA AVGGVVMPAV RQSKEDPNEA AALLACSAVM AETIPPCVNM
IIMGFVANIS IAGLFLAGVV PAAVLAAALA IVAVIFGRRI NLADALTNPR AWMPLLGGAL
VALVMISMIG KGVTSGIATS TEVSAFAVVY ALIVGWLAFR ELTPQSVTRV FVRSASMASS
ILFIVAAASS VSFALTVEQI PALVSDSMIA FAHQYGPTMF LLLSVLIMIV FGAVLEGAPA
LIIFGPLLTP IATQLGINPL HFGTVIVVAM GMGLFAPPVG LGLFATCAIT GTEMKAVARP
MLKYLLVLCI ALVVLILVPS FSLWLPTRLG L
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