| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6973 |
|---|
| Symbol | |
|---|
| ID | 6248488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 1624134 |
|---|
| End bp | 1625264 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642598623 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001863025 |
|---|
| Protein GI | 186471707 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG GTAGGTTGGC AGCACTGGCG GCAGGGCTGT TCGGCACGAC GGCATTTGCG
CAAAGCAGCG TCACACTGTA CGGCGTGCTG GACACGGGCA TCGAATATGT TTCCCACGCA
AACGCGGTGG GGGATCACGT AGTCCGGATG CCCGGCATCA CAGGCGAACT GCCTTCGCGC
TGGGGAGCGC GCGGCGCGGA AGACCTGGGC GGTGGACTCA AGGCCGTATT CATCGTCGAA
AGCGGCTTCA ACCTCAAAGG CGGCGACTCG GGACAAGGCG GCCGGCTGTT CGGAAGACAG
GCGCTCGTCG GACTGGAAGG ACGTTGGGGC GCGCTGACGT TTGGCCGCCA GTACTCGATG
TCGTATTGGG CGTTGGCGGA CGCCGATATT CTTGGACCCG ATATCTACGG TATCGGCGCG
CTCGACGCGT TCTTGCCCAA CGCGAGAAGC GACAGCACGG TCGCCTACAA AGGCAAGTTC
TATGGCTTCA CGGTCGGCGC AACGTGGTCG TTCGGACGCG ATAGCACGGG TACGGGCAAT
TCGCCGGGAC AAGGCACATG CGCCGGACAG GTACCGGGCG ACGTGAATCA ATGCCGCGAA
TGGAGCGCGA TGCTCAAGTA CGACGGCACG TACTTTGGCG TGGCGACGGC CTACGACGAA
CAACGCGGCG GCACCAACGC CGCGGCGAAC TTCTTCGACG GCATCACGCC GTTCGCGATT
TCCGGCACCG GCGACAAGGA TGCGCGTCTT CAGGCAAACG GCTACTTGAA CGTTGCGGGC
GTAAAAGTCG GCGGCGGATG GGTCGGGCGT CATGTGGAAT CGAGCGGACC GGGCGGCGAC
GTGCGCTCCA GTCTGTTCTA TCTGGGGGCG CAATACTATG TGACGCCGAC GCTTGCCATC
GATGGCGAAG CGTATCGCGT GATCGTCGAG CAGCAAGACG CGCGTGCGAC GATGGCGAGC
TTGCGCGCCA CGTACTTCCT GTCGAAGCGA ACTGCCGTGT ACTGCAACGT CGCGCATGTG
TGGAACAGCG CGCGCGCTCG CTATTCTGTC AGTGCGGGTG GCGGTGGCAC CACGCCTGCT
GCGGGGGTTG GGCAGCTCGG TGCTATTGCA GGCGTCCGGC ATACGTTCTA A
|
|---|
| Protein sequence | MKYGRLAALA AGLFGTTAFA QSSVTLYGVL DTGIEYVSHA NAVGDHVVRM PGITGELPSR
WGARGAEDLG GGLKAVFIVE SGFNLKGGDS GQGGRLFGRQ ALVGLEGRWG ALTFGRQYSM
SYWALADADI LGPDIYGIGA LDAFLPNARS DSTVAYKGKF YGFTVGATWS FGRDSTGTGN
SPGQGTCAGQ VPGDVNQCRE WSAMLKYDGT YFGVATAYDE QRGGTNAAAN FFDGITPFAI
SGTGDKDARL QANGYLNVAG VKVGGGWVGR HVESSGPGGD VRSSLFYLGA QYYVTPTLAI
DGEAYRVIVE QQDARATMAS LRATYFLSKR TAVYCNVAHV WNSARARYSV SAGGGGTTPA
AGVGQLGAIA GVRHTF
|
|---|
| |