| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6905 |
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| Symbol | |
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| ID | 6248425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010625 |
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| Strand | - |
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| Start bp | 1544910 |
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| End bp | 1546817 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642598560 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001862962 |
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| Protein GI | 186471644 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAGACG AATGCATCAT GGATGCGCAA CAACAACCAG CCAGCGTGCC CCTGCCCACA
GAAAGCGAAG ACGATCAGTA CTTTGAGCGC GTGACGCGGG TCGCCGCGCG CGCGCTGAAT
TTGCCAATAT CCGTCGTATG TCTCGACCGT CTCGGTCAGC CAGAAGTCAT CGGCGCAAGC
GGGTGCGAAC GGGACGTCGT ATTCCATCTG GAGACGCACT ATAGCCGGAC GCTCCAATGC
GAGGAACCGT TCGTCGTCAG GGATGCGCTG TCTGATGCGG AGCTTGCGCA GGGCCGACTG
GCAACCGGCG AATTGGCGAT CCGCTTTTTC GCAGGCATTG CGCTGCGTCT ACCGTGCGGC
AAACCCATCG GTATGCTATG TGTGATGCAC TCGATGCCGC GGCGCTTCAC GCGCCAGCAG
CGTGAGATGC TGATAGACCT GGGGCAAATG ATCGAGCAAG AAGTTGGCCT GCGCAAGCTG
GACAGCTCTG ATCGTTTGCA GGTGCTTCAG GCGATCGACC GGCTTCAGGC CCAGCATGCC
CTTTACGTCG AGACGTTCCA TCGGACTCCG GTCGCTATCG CGCATATCGG AAGGGACTGG
GAGTGGCGGC ACATGAATGA TGCCTGCGTG AAATTCTTCG CGCACTCGCG CGCTCCGCTA
ACGAAAACGC CCATACTCGA TCTGCTGGAT GCGAATGACC GGACCAGGCT TGAACAGGCC
GTACAGGCAC TCAATCGTGG CCGAGGGGGT GAGGTCCTGA CACTCGACGT AACGTTCCGG
TTGCGCAACA AGCAAAGAAA GCCAGCGCGC GTGCAGGTGG CACGGAAGCA GACGACGCCG
GCCCGCGACG GAGGCTGGCT GTTTGTCATT CACGATACCC AGGCGGACCA ACAGGAAAAA
GCCGCGCGCG ATGCGCGGGA GGCTGCGTTG CATCGGGGAG CCCATGAGGC CTCGGAAGGT
CTGCGCAGGG CGCATGAGCA ACTGACGAGC GCCGAGCGAC AATTGGGAGC CACGCGCGTA
GATTTGCGCG CCATCGCTGA CAATCTGCCG GTGCTGGTCG CTTATGTCGA CGGTGAGCGA
CGTTATCGGT TCGCCAACTC AACCTATCGC GAGTGGCTGG GGTTGGACCC GGAGGAGATC
GTGGGACGGC TCACCCACGA GGTTCTCGAC GCTGACTTTT ACGCTGCCAT CGAGCCGTAC
GTCCAGCGCG TGCTCAACGG CGAAAGGGTC GAGTATGAGG TTGGAGCGAC GCTTAACGGG
AGTCAACGTG CCCTGCGGGG TGTGCTGGTG CCGCGCCTCG TCCATGATCA GGCGGCTAAT
GGGTACTACC TGCTGGTGCA GGACGTGACG GAGCGAACGG CGTTGCTCGA TCGGCTGCGG
CATCAGGCGT TCCACGACGC GCTGACCGGT CTGCCGAACA GACGCGCATT CCTCGAGAGG
CTGGATGAGG CATGCGCAGC AGGCGGCGAC GGTGTGGCGG CCATCATGTT TATCGACCTG
GACGGCTTCA AGGCGGTCAA CGATACATAC GGGCATCAGT GCGGCGACGA AGTACTGGTT
GAAACCGCGC GCCGGATTAG TCGCTGCGTG CGTGACGGGG ATCTGGTTGC GCGGCATGCC
GGGGATGAGT TCACGGTGCT GCTGACCGGC CCTGCAATCG ATCGTGCTGC GTTGGAGAGA
ATTGCACGTG CAATCCTGCT GACACTGAGC CAGCCCATGA CAATCGGGGC AAAGGCCGTC
CAGTTGTCGG CAAGTATCGG CATGCTACCG CGCGACCAGG CAGCGTCATT GAGTGGCGAA
GCCCTGTTAC GCGCGGCGGA TGCCGCGATG TATCGTGCAA AAGTCGCGGG CAAGGCGGGT
ATTGTCGTGC ATGAGCTTCA CGATTCACCG ACCGGCATGT TGGGTTGA
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| Protein sequence | MKDECIMDAQ QQPASVPLPT ESEDDQYFER VTRVAARALN LPISVVCLDR LGQPEVIGAS
GCERDVVFHL ETHYSRTLQC EEPFVVRDAL SDAELAQGRL ATGELAIRFF AGIALRLPCG
KPIGMLCVMH SMPRRFTRQQ REMLIDLGQM IEQEVGLRKL DSSDRLQVLQ AIDRLQAQHA
LYVETFHRTP VAIAHIGRDW EWRHMNDACV KFFAHSRAPL TKTPILDLLD ANDRTRLEQA
VQALNRGRGG EVLTLDVTFR LRNKQRKPAR VQVARKQTTP ARDGGWLFVI HDTQADQQEK
AARDAREAAL HRGAHEASEG LRRAHEQLTS AERQLGATRV DLRAIADNLP VLVAYVDGER
RYRFANSTYR EWLGLDPEEI VGRLTHEVLD ADFYAAIEPY VQRVLNGERV EYEVGATLNG
SQRALRGVLV PRLVHDQAAN GYYLLVQDVT ERTALLDRLR HQAFHDALTG LPNRRAFLER
LDEACAAGGD GVAAIMFIDL DGFKAVNDTY GHQCGDEVLV ETARRISRCV RDGDLVARHA
GDEFTVLLTG PAIDRAALER IARAILLTLS QPMTIGAKAV QLSASIGMLP RDQAASLSGE
ALLRAADAAM YRAKVAGKAG IVVHELHDSP TGMLG
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