Gene Bphy_6641 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_6641 
Symbol 
ID6248178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp1234757 
End bp1235638 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content65% 
IMG OID642598313 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001862715 
Protein GI186471397 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00015606 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCCG ACGCCCTCGC ATTCGACCAG CTTCGCTCGC GCCTGCAAAA AATCGCATAC 
CGGATGCTCG GCTCGGTCGC CGAAGCGGAA GACATCGTGC AGGACGTCTG GCTGCGCTGG
CATTCGGCTG ATCGCACAAG CATCGACAAC GCCGAGGCAT GGCTCGTGTC CGTGACGACG
CGCATGTCCA TCGACCGCTT GCGGGCCGCG AAAGTCGAGC GCGAACACTA CGCAGGCATC
TGGCTGCCTG AGCCGGAAAT CACGGATTCT CCCGTCACGC CGGAAGAAGT GACGGAGCGC
GCGGACGACG TCTCCGTGGC GTTTCTGATG CTGCTCGAGC GGCTTACGCC GGAAGCGCGT
GCGGCGTTCC TGCTGCGCGA AGTCTTCGAC GCTGACTACG ACGAAGTCGC CGATGCGATC
GGCAAGACGC AAGCCGCGTG CCGTCAGCTG GTGAGCCGCG CCAAGGCGCA ATTGCGCGAC
GAGCGCCCGC GCCGTGCGGT GCCGCGCGAG ACACATCGCC AGTTGTTGCA GAGCTTTGCA
CAGGCACTGG AACGCGCGGA CTTCCATGCG ATTAGCGCAT TCCTCGCGGA AGACGCGATC
CTGATCGGGG ACGGCGGCGG CAAGGTGACG AGCCTGCCGA AACCGGTGGT AGGCGGGCGG
CGCATCGCGC AGCTGTTCTA CGCGGCGTTG CGCCGCTACC CCGGCGGGGT TCATATCAGG
CTTGTGACGC TCAACGGCCG GCCGGCGTTC CTGCGCTATA TCGAAGGGCA GCTCGAATCC
GCGCAATCGT TCGAAACGGA CGGCGAGCGT ATCGTCGAAA TCCATGTGCA ACGCAATCCC
GACAAGCTCG CGCGTATCGC CGCTGCATAC GGCGCGCTCT GA
 
Protein sequence
MDADALAFDQ LRSRLQKIAY RMLGSVAEAE DIVQDVWLRW HSADRTSIDN AEAWLVSVTT 
RMSIDRLRAA KVEREHYAGI WLPEPEITDS PVTPEEVTER ADDVSVAFLM LLERLTPEAR
AAFLLREVFD ADYDEVADAI GKTQAACRQL VSRAKAQLRD ERPRRAVPRE THRQLLQSFA
QALERADFHA ISAFLAEDAI LIGDGGGKVT SLPKPVVGGR RIAQLFYAAL RRYPGGVHIR
LVTLNGRPAF LRYIEGQLES AQSFETDGER IVEIHVQRNP DKLARIAAAY GAL