Gene Bphy_6552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_6552 
Symbol 
ID6248089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp1136103 
End bp1137323 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content63% 
IMG OID642598224 
Productporin 
Protein accessionYP_001862626 
Protein GI186471308 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.961428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAGGA GTACCAGCAG CGCAAAGGCA GTTGTCATCG GGGCTGCCCT CGTCGGCTGC 
GCGCCGGCAT TCGCGCAAAG CAGCGTCACG CTTTACGGCA TCGTCGATAA CGGGCTCGCT
TACCAGAGCA GCTCGACGTC GCTGGGCTCA ACGAGCGGCG GACACTCGGT CGTCAAGATG
ACACCGGGCG TGTGGGCGGG CAGCCGCTTC GGCTTGAAGG GCGGCGAGGA TCTCGGCGGT
GGCACCCGAG CGATCTTCCA GCTCGAATCG GGCTTGAATT CCGCGACGGG CGCGGCTCAG
TACACCAACG CGCTGTTCGG CCGCCTTGCG TATGTCGGCG TCACGAATCC GGCCTACGGT
ACGTTCACTG CGGGCCGCCA GTACGCGTCG TATTATCAGT TGCTGTCGCC GTACAGCCCG
ACTACATGGA TCACGGGCTT CTATGGCGCG CACCCTGGGG ATATCGACGG TCTGGACACG
ATCTACCGCG CGAACAACAC GCTCGAATAC ACTTCGCCGA AGTTGTACGG GCTCACCGTG
AGCGGGTCGT ATTCGCTCGC GGGCGTGGCA GGCAGCGTAA GCCAGGGCTC GACGTGGACG
ACGGCCGTCC AGTACGCAAT GGGTCCCATC GGCCTGGCAG TCGGCTTTTC GCGCATCAAC
AACTCGACCT CGGGCGGCGG CGCGTGGGGT TCGGATTCGA CGACGTCGAA CGGCGGCTCG
CAGATCGGCG TATCGGCGTT GACGAACGGC TACCAGACCG CGCGTGCGCA ACAGCGCTTC
GCTGTAGGCG GCGGCTACAC GTTCAACAGC GCGTGGGATG TCACGGCGAC GTACTCCAAT
GTGCAGTACA TCCCCGGCAT CAATTCGAAG TTCACCGATA CGGCGATCTT CAATACAGGT
GGCGTCGTGC TGCACTGGAA GCCGGTAACG GTGTGGGATC TTGCTGCGGG TTACAGCTAC
ACGCGCGCCA CGCAGGCGAA CGGCATCAAG GATAGCGCGA CGTATCAGCA GTTCAATCTC
TCGCAGTACT ACGCGCTGTC CAAGCGGACG GGCCTTTATG CGCTCGAAGC CTATCAACGC
GCAAACGGCA AGACGCTCGG CACGAACGGC TCGAGCCAGA TCATCGAAGC GACCGCGACG
ATCGGCGATG GCTTCAATAC GACGCCGTCG TCGACGGGCA GCCAGTTCGC GTTTGGCCTC
GGCGTCATTC ACCGCTTCTG A
 
Protein sequence
MKRSTSSAKA VVIGAALVGC APAFAQSSVT LYGIVDNGLA YQSSSTSLGS TSGGHSVVKM 
TPGVWAGSRF GLKGGEDLGG GTRAIFQLES GLNSATGAAQ YTNALFGRLA YVGVTNPAYG
TFTAGRQYAS YYQLLSPYSP TTWITGFYGA HPGDIDGLDT IYRANNTLEY TSPKLYGLTV
SGSYSLAGVA GSVSQGSTWT TAVQYAMGPI GLAVGFSRIN NSTSGGGAWG SDSTTSNGGS
QIGVSALTNG YQTARAQQRF AVGGGYTFNS AWDVTATYSN VQYIPGINSK FTDTAIFNTG
GVVLHWKPVT VWDLAAGYSY TRATQANGIK DSATYQQFNL SQYYALSKRT GLYALEAYQR
ANGKTLGTNG SSQIIEATAT IGDGFNTTPS STGSQFAFGL GVIHRF