Gene Bphy_6291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_6291 
Symbol 
ID6247834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp856819 
End bp857997 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content59% 
IMG OID642597969 
Productporin 
Protein accessionYP_001862371 
Protein GI186471053 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00384497 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.183754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGA CTCTGATTGC CGGTGCGGCG CTGGCTACGT TGGCCGGCGC AGTGCAGGCG 
CAAAGCAGCG TGACGCTTTA TGGTCTGATC GACACAGGCC TCACTTACAC CAACAGCCAG
ATCACCGGCA CCGGAGCGGG TGGTCACAGC AATTGGCAGA TGACCAGCGG TGGTGTCCAG
TACAGTCGCT GGGGTCTGCG CGGAGCGGAA GATCTCGGCG GAGGCTTACG GGCGATTTTC
ACTCTCGAAA ACGGCTTCAA CGTGAACAAT GGTCAGTTGT CGTCTTCCAA TCGGATATTC
AACCGCTTGG CCTACGTTGG GGTATCCAGC CGTGACTTTG GCTCGCTGAC CCTGGGACGT
CAAACCGACG ACATGGTTGA CTTCCTGGCG CCACTCTCGT TGACCGGGAC ACAGTATGGC
GGGACTCACT TCGCCCATCC GTTCGACGTC GACAACCTGA ACGATTCGTT CCAGATCAAC
AACTCGGTCA AGTATCAAAG TCCGGATTTC GCGGGCTTCA AACTGGGTGC CTTATACGGC
TTTTCGAACC AGGCCGGTGG TTTCGCGAAC AATCGTGCGT ACAGCGTCGG CATGTCTTAC
ATGTGGGGGC CGTTGAACTT CGGCGCCGGG TATCTGCACC TGAACAACTC GGCCCGCACC
CCGGCACAGC TCAATACGAA CGGGGCAGTC ACGGATACCC TTGGGGCCTC TGTCTCTGGC
CTTCTGACAC CGACTGCCGT GCCGCTCGGT GCACTCGCGA GCCGCCAGCA GACGTGGGGC
GGAGGCGTCA ACTATGCATT CGGTCCGTTG GTCGCTGGCT TCGTATATAC GCAGACGAAC
CTGACTGAAC TTTTCCTGAC CGGCTTCAAC ACCCACTTCC AGAACTATGA AGGAAACGTC
CGGTTTGCGC TGACGCCGGC CGTTATGTTG GCGGCAGCGT ACACCTACTC CCGCGCCGGT
GGAAATGCCG GTGGTGGCGC TCCGCACTGG AATCAGGTAA GCGCGCTCGC CAACTACGCC
TTCTCGAAGC GCACGGACGT CTATATCCAA AGCACCTATC AGAGCGTGAG CGCGCGCGCT
GGCAATCCGT TGGGTGTCGC CTGGATCAAC GGTGTGAGTT CCCCCGCGTC GACATCAAAT
CAGGTCGAGG CCACCGTCGG CCTACGTCAC CGCTTCTGA
 
Protein sequence
MKKTLIAGAA LATLAGAVQA QSSVTLYGLI DTGLTYTNSQ ITGTGAGGHS NWQMTSGGVQ 
YSRWGLRGAE DLGGGLRAIF TLENGFNVNN GQLSSSNRIF NRLAYVGVSS RDFGSLTLGR
QTDDMVDFLA PLSLTGTQYG GTHFAHPFDV DNLNDSFQIN NSVKYQSPDF AGFKLGALYG
FSNQAGGFAN NRAYSVGMSY MWGPLNFGAG YLHLNNSART PAQLNTNGAV TDTLGASVSG
LLTPTAVPLG ALASRQQTWG GGVNYAFGPL VAGFVYTQTN LTELFLTGFN THFQNYEGNV
RFALTPAVML AAAYTYSRAG GNAGGGAPHW NQVSALANYA FSKRTDVYIQ STYQSVSARA
GNPLGVAWIN GVSSPASTSN QVEATVGLRH RF