Gene Bphy_6117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_6117 
Symbol 
ID6247682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp669629 
End bp670495 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content64% 
IMG OID642597818 
Productvirulence protein SciE type 
Protein accessionYP_001862220 
Protein GI186470902 
COG category[R] General function prediction only 
COG ID[COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0659534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.445465 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATGT CGCGCGTATC GCTCGCCACA CGCCTGGATG ACGTGCAGGG CATGATTCGC 
CGGGAACCCA CCGCTGCAGG TCACCGCTGG ACCTTGTTCC AGCTGCTCTG CGTGACGCAG
CAGTGGGAGC GGGCGGTCCA GCAACTGCAG GTTTTCGCGC AATTGAATCC CCAGCAGGTG
CAGGCTGCAC AGGCGTACCG CGACCTGATC CGCGCCGAAC GGTGGCGCAC GAAGGTCCTG
GATGGACTTG CGCAGCCTGG TTTTGTTATC GGTCCCCCAT CGTGGGTCGA AAATCTCGCT
GAGGCGCTGC GTCTGACGGC GGCTGGGCAA AGTGATGCCG CCGACGCCAT TCGTGAATCA
GCGCTGGATC AAGCGCCGCT CGTGCGCGGC GGCGGAGCAA ATCATTCGTT TGAGTGGATC
GCCGACAGCG ATTCACGTCT CGGCCCTGTC TGCGAAATCA TCACGGCAGG ACGCTACCGC
TGGCTGCCTT TTTCCGATAT TGCGGCTTGG GAAATCGGGC GTCCGGCGAC GATGGTTGAT
TTCGTCTGGG CACCGTGCCT GCTCACGCTC GTCGACGGTG CCACGGTTCG TGGGTTTATG
CCCGCGCGTT TCCCGTCCGT CGCGGACGCG ACGTACGACA GCGCCGTTCT CGATGCGCTG
CGCCTCGGCA ATATGACGAT CTGGACGGAT GCGGGCCTCA CCGGTGTGCT CGCGGAAGGC
CGCAAGACGT GGGCAACCAG TGCCGGCGAT GTGGGACTGT TCGAGCTGGA TGTCTGTACG
TTTGGCTGTG ACGCGGACCG TGGGTCGGTC GACAGCGTTG ACGGGATGGC AATGCAGGAT
GAAGGGGGCG TCGATGGAGC GGCGTAG
 
Protein sequence
MTMSRVSLAT RLDDVQGMIR REPTAAGHRW TLFQLLCVTQ QWERAVQQLQ VFAQLNPQQV 
QAAQAYRDLI RAERWRTKVL DGLAQPGFVI GPPSWVENLA EALRLTAAGQ SDAADAIRES
ALDQAPLVRG GGANHSFEWI ADSDSRLGPV CEIITAGRYR WLPFSDIAAW EIGRPATMVD
FVWAPCLLTL VDGATVRGFM PARFPSVADA TYDSAVLDAL RLGNMTIWTD AGLTGVLAEG
RKTWATSAGD VGLFELDVCT FGCDADRGSV DSVDGMAMQD EGGVDGAA