Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_6117 |
Symbol | |
ID | 6247682 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | + |
Start bp | 669629 |
End bp | 670495 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642597818 |
Product | virulence protein SciE type |
Protein accession | YP_001862220 |
Protein GI | 186470902 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0659534 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.445465 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGATGT CGCGCGTATC GCTCGCCACA CGCCTGGATG ACGTGCAGGG CATGATTCGC CGGGAACCCA CCGCTGCAGG TCACCGCTGG ACCTTGTTCC AGCTGCTCTG CGTGACGCAG CAGTGGGAGC GGGCGGTCCA GCAACTGCAG GTTTTCGCGC AATTGAATCC CCAGCAGGTG CAGGCTGCAC AGGCGTACCG CGACCTGATC CGCGCCGAAC GGTGGCGCAC GAAGGTCCTG GATGGACTTG CGCAGCCTGG TTTTGTTATC GGTCCCCCAT CGTGGGTCGA AAATCTCGCT GAGGCGCTGC GTCTGACGGC GGCTGGGCAA AGTGATGCCG CCGACGCCAT TCGTGAATCA GCGCTGGATC AAGCGCCGCT CGTGCGCGGC GGCGGAGCAA ATCATTCGTT TGAGTGGATC GCCGACAGCG ATTCACGTCT CGGCCCTGTC TGCGAAATCA TCACGGCAGG ACGCTACCGC TGGCTGCCTT TTTCCGATAT TGCGGCTTGG GAAATCGGGC GTCCGGCGAC GATGGTTGAT TTCGTCTGGG CACCGTGCCT GCTCACGCTC GTCGACGGTG CCACGGTTCG TGGGTTTATG CCCGCGCGTT TCCCGTCCGT CGCGGACGCG ACGTACGACA GCGCCGTTCT CGATGCGCTG CGCCTCGGCA ATATGACGAT CTGGACGGAT GCGGGCCTCA CCGGTGTGCT CGCGGAAGGC CGCAAGACGT GGGCAACCAG TGCCGGCGAT GTGGGACTGT TCGAGCTGGA TGTCTGTACG TTTGGCTGTG ACGCGGACCG TGGGTCGGTC GACAGCGTTG ACGGGATGGC AATGCAGGAT GAAGGGGGCG TCGATGGAGC GGCGTAG
|
Protein sequence | MTMSRVSLAT RLDDVQGMIR REPTAAGHRW TLFQLLCVTQ QWERAVQQLQ VFAQLNPQQV QAAQAYRDLI RAERWRTKVL DGLAQPGFVI GPPSWVENLA EALRLTAAGQ SDAADAIRES ALDQAPLVRG GGANHSFEWI ADSDSRLGPV CEIITAGRYR WLPFSDIAAW EIGRPATMVD FVWAPCLLTL VDGATVRGFM PARFPSVADA TYDSAVLDAL RLGNMTIWTD AGLTGVLAEG RKTWATSAGD VGLFELDVCT FGCDADRGSV DSVDGMAMQD EGGVDGAA
|
| |