Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_6112 |
Symbol | |
ID | 6247677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010625 |
Strand | - |
Start bp | 663139 |
End bp | 663624 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642597813 |
Product | Hcp1 family type VI secretion system effector |
Protein accession | YP_001862215 |
Protein GI | 186470897 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.24668 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACAGG ATATTTTCCT GAAGATTGAT GGCATCGACG GTGAGTCGCA GGACGACAAG CACAAGAACG AGATCGAAGT ACTGAACTGG AACTGGGAAA TCAGCCAGGA ATCGTCGATG CATTCGGGCA GCGGCGGCGG CGCCGGCAAG GCGACGGTTG GCGACCTGTG GTTCCAGCAC GGCATCGACC GTGCGAGCCC GAACCTCATG AAGTACGCGC TCACGGGCAA GCACATCGAC CAGGCTGTGC TCGTCATGCG CAAGGCCGGC GGCAACCCGC TCGAATACCT CAAGATCACG ATGAGCGACG TGCTGGTCAC GCGCGTGAAG CCGTCGGGCA GCAAGAACGG CGAAGAAAAG AGCCTCGAGG AAGTGTCGCT GTCGTTCGCG AAGGTCAAGC AGGAATACGT CGTCCAGAAC GCCCAGGGCG GCAGCGGCGG CGCCGTGACG GCCAGCTACG ACATCAAGGG CAACAAGGAG GCGTAA
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Protein sequence | MAQDIFLKID GIDGESQDDK HKNEIEVLNW NWEISQESSM HSGSGGGAGK ATVGDLWFQH GIDRASPNLM KYALTGKHID QAVLVMRKAG GNPLEYLKIT MSDVLVTRVK PSGSKNGEEK SLEEVSLSFA KVKQEYVVQN AQGGSGGAVT ASYDIKGNKE A
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