| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_6108 |
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| Symbol | |
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| ID | 6247673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010625 |
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| Strand | - |
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| Start bp | 655657 |
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| End bp | 659703 |
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| Gene Length | 4047 bp |
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| Protein Length | 1348 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642597809 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001862211 |
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| Protein GI | 186470893 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.916616 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT TCCTGTCGTT TCTGGTCTCG CGCCAGTTCC TCGCCTTTCT CGCGCTGATT
GTTGTCGCGC TGGTGATCTG GTATGTCGGA CCCTTTGTCG CATTCGGCGG CCTGAAGCCG
CTCGCAGGCG CAGGCATGCG TGTGCTCGTC ATCGCCCTGC TGCTCGCGGG CGTTCTGCTC
TGGCTGGTCC GCTGGTCGAC CAGCCCCGTC ATCGTGGCGT TGCTGTGCCT GCTGATCTGG
TACGCGACGC CGCTGCTCAC GTTTGGCAAG GCCCAGCCCT TCGCGCCGGA GTCGGCACGC
ATCATCGCCA TCGCGGTCGC GCTGTTCATT TTCGCCGTGT ACTGGCTCTT CCGCCTCTGG
CAGGAGATGA AGAGCAACCG CTCGCTGGTC GACCGGATGC TGACGTTCGG TGGCAAGAAG
GAACCGTCGC CTGCCGCAGT ACAGCTGAAA GAGGTCGGCG TCATTGTGTC AAGCGCCCTC
GCCCGCCTGA AGGCGATGCG AACCGGCGCG CGTGGCATAG GACGTCTTTT CCAGGGCAAA
CGCTACCTGT ATGAATTGCC GTGGTATATC GCGCTCGGCT CGAAGTCTTC GGGCAAGACA
AGCGCCCTGC TGAACGCGGG TCTCGCGTTC CCTGTTGCCG AACAGATGCA GCGTGCCGCA
GGCGCCGCGC AGAAGCCAAC TGCCAACGTC GACTGGTGGC TCACCAACGA TGCGGTGCTG
ATCGACACGG CTGGCTACTA CACCCGTCAC GGCACATCCG GACACGCTTT GCCGCCGCCT
CCGGAAAGCA ACAATCCCAC GGAGCGCAAG GCTACCGACA CAAGGACGGA GAACGAAAAA
TCTGGGCATG GGAAAGCCCT CGACGCGCCG AAAGCATCGA CCGCGTCAAC CACGTGGGCC
GATCCCGCGC AGGCTCGCCA GCGAATGGAC TCGGAGGAAT GGCTCGGCTT CCTCGGCATG
CTTCGGACGC ACCGGCCGCG CGCACCCATC AACGGTGCGC TGCTCGCGGT CAACCTCGGC
GAACTGACGA GCCAGGACGA CAGCAGCCGC ATGGCCGAAG CGGCCGCGTT GCGTGCGCGC
CTGGCCGAAC TGCGTGGCGA GCTCGGTATC CGCTTTCCGG TCTATCTGGT CGTGACCGGC
ATGGACCAGC TCACCGGCTT CGCCGAATAC TTTTCGTCGC TAACGGCAGA GGGCCGTGCC
CAGCCATGGG GTTTTACGCT TCCCTACGGC AAGGAAACCA TCGCGAAAGA AGGCGTCACC
GCACGGTGCC GCTCGGAGCT GGGCCAGCTC GCACAACGCC TCGAACGTGG CATCGATACC
CGCCTGCAGG ACGAATACGA TCCGCTCCAC CGTCGCAAGC TCGCCGCGCT GTCACAGGAG
TTTGCCGCCC TGAGCGCGCC GCTCATCGAA CTGATCGAGC GGGTGTTTCT CGATTCACGC
TACGATGACA CGCAGCTGTA CTCGACGCTG CGCGGCGTGT ACTTCACGAG CGCAGAACAG
GCTGGCAACG AGAGGGTGGC CGAGCGGCGC ACCATCGTGC AACGGGTGAT CGCGGGCATG
AAGGCGCCGG CAACATCGCT GCGCGAGGCA ACCAGCGAAG GCTTCTTCCT GCACGACCTC
TTCACGAAGG TTGTCATTCC CGAGGCGCAT CTCGTGCGCC CGAACCTGCG CTGGGAGTTC
CGCTTCCGTC TGCTACGCCT GGTTGGCCAC GCGCTCGCCC TGCTGCTCTT CGTCTGGCTC
GCCATTGGAC TGTGCGTGAG CTTCGGCAAC AACAGCGATT ACCTTGGTGC CATTGCGCGC
AAGACGCAGG CGCTCGCGGC GCGTGTGGCG CAGCTGTACC ACGACCCGAA GGCGGAAGCC
GTGCCCGATA CGCTGAGCGC CGCGCGCTAT CTGCCGACGT ATCAGGGGCT CGACCTGTCG
GACCCCGACA GCACCTTCCG CTACGGTCTC TACACGGCCC CCGATATCGT CACGGAAAGC
CGCCACATCT ATGACGCGCT TGAGGACAAC CTGCTGGTAC CGCAGATCGT GCACCGGATG
GAAGACGTGA TCTCGCAGTC GATCACGAAC AAGGATCCGA AGGCGACTTA CGAGGCACTG
CGCGTCTATC TCATGCTTTA TGACAAGGCG AAATTCAACG CCGATGACGT CAAGGCGTGG
GTACTCGACG ACTGGGCGAA GACCGACAGC GCATCCGTAT TCGGCGGTCG CGCCTCGATG
ATCGATCACG TCCAGCAATT GTTCTCCGGC ACCCGGGTAG TCCAGTCGCC GCTCATCCGC
AACGACGCTC TGATCCAGCA GGCCCGGGCC TTCCTCGACG GCAGCAATGC GACCGACCGG
CTCTACGAGC GGGCCAAGGC CGCCATGATG AAGGAGGCGC CTGACGAGTT CACGCTGATC
CGCGCGGTGG GCCCCCAGGC GGGGACTGTC TTCACGCGTG CAAGCGGTGC GCCCCTCTCG
CGCGGCGTGC CGGGCCTTTT CACGTTCGAC GGCTACCGCA ATCTTTTCGA CAAACACCTG
CCCGAGTTCG TCCAGGTCGC GCGCGATGAC GATGCGTGGG TGATGGGGCG CTCTTATCTC
GGGGGGCTCT CCGACCAGGC TCAAAAAAAA ACTGCGGAGC TTGTAAGGAT GGCCACTGGT
GCCGACGATC CACTGACCGA AGCGATCCGG CGGGAGTACC TCACGGAGTA TGCCCAGCAA
TGGGACGCAT TTCTTGGCGA CATCCGCACG GTGAGAGGGA CGAGTCTTGC GTTCAACCTG
CAGGTGCTGC GCAGTTTTGC TGCACCTGAT TCCCCTCTCG CGCGGCTAGC GCGCGCGGCC
GTGCACGAAA CGACGCTCAC GCAGCCAGTC GCCGCAACCG GTGGATCACT GCTCCAGAAG
GCGACCGACC AGATCAGCCA GAAGGCTGAC TCCGCGCTGG GCATCCGTGC GTCGGAACAG
GTCGAGCGCG AACTGGTCGA CAGCCGTTTC GCTGCGCTGC GTGAGGTCGT GACCGGCAAC
GCAGAGGGTC AGGCCACGGG CGACGCGGCC GCACAGCCCG GGAAAACCGG GCTGGACGGT
GTGACCAACC TGCTGAACGA CTACTACACT GCGCTCACGG TGGCGGATAA CGCCATCAGC
AACAACAGCA TGCCGCCGGC GAGTGACACG GCCGCGAAGC TGAAAATGAC GGCGAACACC
ATGCCGCCTC CCTTCCGTGC CGTGCTGCTG CAACTCGCCC AGCAGGGGTC GCAGGAGGTC
AATCAGGGCA TCGGTCAGCT GCTTTCACGT CAGATGGGTG CGGTGATCGG CGATACGTGC
CGCCTTACGA TCGAGGGCAA CTACCCGTTC ACACCAGGTA GCACGCGCGA CGTGAGCATT
GACGACTTTA CGCGCGTGTT CGCGCAGGGC GGCGTCATTG ACGACTTCTT CAACAAAACG
CTGGCCCCCT TCGTCGACAC CTCCGCGAAA CCGTGGCGCT ACCGCACGTT GCCCGGTGCG
ACCGAGCCGG TCCAGGGGCC GGACCTTGAG CCGTTCCAGC ATGTGAAAGC GATCCGCGAT
GTCTTCTTCA GCGGCCCGGG CCAGAACCAG ATGACGTGGA AAGCTAATCT CCAGGTGCCG
GAGCTCGATC CCGCCATTAC CGGCCTCATG ATCGATATCG ACGGACAGAC GATGCTTTAC
CAGCACGGAC CGGTCACGCC TTTCACGGTT AGCTGGCCCG GCCCTCGCGG CGGCGTACAC
GCCGAGATCA CGGCGAACCC GCGCATCCGG CCCGAGACGT CAACCATGTC TGCCGATGGC
CCATGGGCGT TGATGCGCCT GCTGGCCAAG GGGCACGTCG TGGAGACGGC CACACCCGGA
AAGACACTCG TCGCCTTCGA TTTCGATGGG CGCCGCGCCG TGCTCGATAT GGACAGTACC
GGTAGCGTTG CCAACCCGCT GACGAGCGAC GTCCTGCGAA CTTTCCGCTG CCCAAGCTCG
ATGCCGGTAT TCGGTCTTGT CGACAGCGGA CCGCCGCCGG GCCTGCCTGC TGCGGGGCTT
CCCATGACGC CACCCAGCCC GTATTGA
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| Protein sequence | MKKFLSFLVS RQFLAFLALI VVALVIWYVG PFVAFGGLKP LAGAGMRVLV IALLLAGVLL
WLVRWSTSPV IVALLCLLIW YATPLLTFGK AQPFAPESAR IIAIAVALFI FAVYWLFRLW
QEMKSNRSLV DRMLTFGGKK EPSPAAVQLK EVGVIVSSAL ARLKAMRTGA RGIGRLFQGK
RYLYELPWYI ALGSKSSGKT SALLNAGLAF PVAEQMQRAA GAAQKPTANV DWWLTNDAVL
IDTAGYYTRH GTSGHALPPP PESNNPTERK ATDTRTENEK SGHGKALDAP KASTASTTWA
DPAQARQRMD SEEWLGFLGM LRTHRPRAPI NGALLAVNLG ELTSQDDSSR MAEAAALRAR
LAELRGELGI RFPVYLVVTG MDQLTGFAEY FSSLTAEGRA QPWGFTLPYG KETIAKEGVT
ARCRSELGQL AQRLERGIDT RLQDEYDPLH RRKLAALSQE FAALSAPLIE LIERVFLDSR
YDDTQLYSTL RGVYFTSAEQ AGNERVAERR TIVQRVIAGM KAPATSLREA TSEGFFLHDL
FTKVVIPEAH LVRPNLRWEF RFRLLRLVGH ALALLLFVWL AIGLCVSFGN NSDYLGAIAR
KTQALAARVA QLYHDPKAEA VPDTLSAARY LPTYQGLDLS DPDSTFRYGL YTAPDIVTES
RHIYDALEDN LLVPQIVHRM EDVISQSITN KDPKATYEAL RVYLMLYDKA KFNADDVKAW
VLDDWAKTDS ASVFGGRASM IDHVQQLFSG TRVVQSPLIR NDALIQQARA FLDGSNATDR
LYERAKAAMM KEAPDEFTLI RAVGPQAGTV FTRASGAPLS RGVPGLFTFD GYRNLFDKHL
PEFVQVARDD DAWVMGRSYL GGLSDQAQKK TAELVRMATG ADDPLTEAIR REYLTEYAQQ
WDAFLGDIRT VRGTSLAFNL QVLRSFAAPD SPLARLARAA VHETTLTQPV AATGGSLLQK
ATDQISQKAD SALGIRASEQ VERELVDSRF AALREVVTGN AEGQATGDAA AQPGKTGLDG
VTNLLNDYYT ALTVADNAIS NNSMPPASDT AAKLKMTANT MPPPFRAVLL QLAQQGSQEV
NQGIGQLLSR QMGAVIGDTC RLTIEGNYPF TPGSTRDVSI DDFTRVFAQG GVIDDFFNKT
LAPFVDTSAK PWRYRTLPGA TEPVQGPDLE PFQHVKAIRD VFFSGPGQNQ MTWKANLQVP
ELDPAITGLM IDIDGQTMLY QHGPVTPFTV SWPGPRGGVH AEITANPRIR PETSTMSADG
PWALMRLLAK GHVVETATPG KTLVAFDFDG RRAVLDMDST GSVANPLTSD VLRTFRCPSS
MPVFGLVDSG PPPGLPAAGL PMTPPSPY
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