| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5978 |
|---|
| Symbol | |
|---|
| ID | 6247549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 510771 |
|---|
| End bp | 511343 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642597685 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001862087 |
|---|
| Protein GI | 186470769 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.332632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.785874 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATA GTTTGCAGAA GTGGGTGGGA CGCAATCGTC CGCCGCGTGT CCAGATCACC
TACGACGTAG AAGTCGGCGA CGCGGTTGAG AAGCGCGAGC TTCCGCTAGT GGTCGGTTTG
CTGGCGGACC TCTCGGGACA GCCTGCAACG CCGCTCCCCA AGCTCAAGGA ACGTCGTCTG
GTCGAGATCG ACCGTGACAA CTTCGATGAG ATCATGGGCA AGATCGCCCC GCGTCTCGAC
CTCTCCGTGC CGGACACGCT CAAGGGCGAG GGCAACATCA AGGTCGAACT GAAGTTCGAG
AAGTTCCAGG ATTTCCATCC CGAAAGCATC GTCAACCAGG TGCCGCGCCT CGCCAGGCTG
CTCGAAGCGC GTCAGCAGCT GCGCGATCTG CTCGCCAAGC TCGACGGTAA CGACGAACTC
GATTCGATGC TCGAGCGTAT CGTCCAGAAC AGCGAGGAAC TGAAGAAAGT TCAAAGTCAG
GCGCATGCCA GCGATGCTCC CGTGGCTGCA TCGGCGGCAT CCGACGCAGT CGCAGAGCCG
GCTGCTGCCC CGGACGACGC ACCTGCCGCC TGA
|
|---|
| Protein sequence | MSNSLQKWVG RNRPPRVQIT YDVEVGDAVE KRELPLVVGL LADLSGQPAT PLPKLKERRL
VEIDRDNFDE IMGKIAPRLD LSVPDTLKGE GNIKVELKFE KFQDFHPESI VNQVPRLARL
LEARQQLRDL LAKLDGNDEL DSMLERIVQN SEELKKVQSQ AHASDAPVAA SAASDAVAEP
AAAPDDAPAA
|
|---|
| |