| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5954 |
|---|
| Symbol | |
|---|
| ID | 6247526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | - |
|---|
| Start bp | 477303 |
|---|
| End bp | 479336 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642597662 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001862064 |
|---|
| Protein GI | 186470746 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0983903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCAT GCCAGCCGCT CGCGGGACAA ACCAGCCAGG TCGAAGCCAT CATGCGTACG
CGCCCTGGCG GATTCGCACC GAGCGCGCCA GTGGTTCGCT CATGGACGCG CTGCATCGAA
GACTACAGAC TCGATCCCGA CGTGTGCCTG CCGCCTCCCG TGATGACCAG CGCCGAACTC
GCATCGCGAC GCGAACAGAA TGCCAGTCTG GTCGATTGCG CGAAGCTCGA AATGGCCACG
CTTTATCAGC AGCTCGGCGA CTCGGAGCTT GCCGTCGTGT TGACGGATAG CGATGGCGTG
ATCCTGCATC TCGCGTCGTC GCCCGAGTTT GCAGGCGAGG TCGAGGACTG GGGACTGTGC
GCGGGCGCCG TGTGGAACGA ACGCGAAGCG GGCACGAACG GCATGGGCAC CTGCCTCGCG
GAAGGCGAAG CGATCGCCGT GCGTCAGCAC GAACATTTCT ATCAGCGCTA TACCTCGCTC
ACATGCGCCG CCGTGCCCGT ATTCGACGAA GGAGGCTCCA TCGCGGGCGT GCTCGACGTC
ACCAGCCGTT CGCCGCTGTT GCAGCAGCAT TCGCTCGTGC TGGTCGGCAT GTCGCGGCAG
ATGATCGAAA ACCGTCTGCT CGACGCCCGT CATACACACG CGTTCCGTAT TCAGTTTCAC
AGCAGGCCCG AGTTCGTCGG CACCTTGCAT GCCGGCAAGC TCACCGTCGA CGATGACGGC
ATGATTCTCG GCGCGAACCG CAGCGCGCTC GCGCAACTCG GCTTCGCGAC GCTCGACGAG
ATCGCCGGCA AGCCGGTCAC CGACGTTTTC AATGCGTCGC TGGCCGAGAT CGTCGCGCGC
AGCACGCGCA GTTCGTTCTA TCCCGTCGCG ATCTATCGCA CGCATGCGTC GAGCCGCTTC
TTCGTCGTCG CTCAGGAGCC GCGCGATCGT GCCGCACGCG AAGCTATCGC GCCCGCGCGT
GCGGAAGCAT CGAACCACGA TGCGTCGTCG GCACTCACGC GGCGTCCGGC TCGCGCAACG
CGCACGGCGA GCCCATTGCG CCAGGGCACA GCGCGCGTGG AATTCGGCGA TGCGCAGATC
GCCAGCCAGT TCGATCTCGG CGCGCGTGTG ATCGATCGCG GTATCGCGGT GCTCGTTCAC
GGCGAAACGG GCAGCGGCAA GGAGGTGTTC GCCAACGCAC TGCATGCCGC AAGCGAACGC
AGCAACGGTC CGTTCGTCGC GGTCAACTGT GCTTCGCTGC CGGAACATCT GATCGAGAGC
GAACTGTTCG GCTATCGCGC GGGCGCTTTC ACGGGCGCGC AGCGCGAAGG ACGGCGCGGC
AAGATTCTGC AGGCCGACGG CGGCACGCTG TTTCTCGATG AAATCGGCGA CATGCCGCTC
GCCCTGCAAG CGCGGCTGCT GCGCGTGCTC GAAGAGCGCG AAGTCACGCC GCTCGGTTCA
GAATCTGTCG TCAAGGTCGA CTTTCAGCTG GTGAGCGCGA GTCATCGCGA TCTCAACGAA
CTCGTCGAAA GCGGGCAGTT CCGTGAGGAT CTCTACTATC GGCTCAATGG CGTCATGCTG
GAGCTTCCGC CCCTGCGCGC CCGCAAGGAC AAGCTCGCGC TGATCCGGCA TTTGCTGGAA
AAGGAGCGCA CGCCTGCGCT CCGACTTTCG GCGGACGTGC GACAGATTCT GCTCGACAGC
GACTGGCCCG GCAATATCCG TCAGTTGCGC AACGTGCTGC GCACGGCGAC GGCGCTCTGC
GACGGCGATG AACTCACCAC GGCGCATCTG CCCGCGTGGC TCGTGCAGCG CGAGAAAAAC
CTGAATCGCC CGCGAGCCGC CGGCGCGTCC ACTGCCCTCT CCGACACCGA CGATTGCGCC
GATATGGAAG AGGTGTCGAA CGCGCCGCTC AACGCGATTC TGCAGGCCGA ACGCGAGGCG
CTGCTCGCGT TGCTCGACAA GCATCGCTGG AACGTGAGCC AGGTTGCGCT CGCGCTCGGC
ATCACACGCA ATACGCTCTA CCGGAAAATG AGACGCGTGA ACATCAAGAC GTGA
|
|---|
| Protein sequence | MSSCQPLAGQ TSQVEAIMRT RPGGFAPSAP VVRSWTRCIE DYRLDPDVCL PPPVMTSAEL
ASRREQNASL VDCAKLEMAT LYQQLGDSEL AVVLTDSDGV ILHLASSPEF AGEVEDWGLC
AGAVWNEREA GTNGMGTCLA EGEAIAVRQH EHFYQRYTSL TCAAVPVFDE GGSIAGVLDV
TSRSPLLQQH SLVLVGMSRQ MIENRLLDAR HTHAFRIQFH SRPEFVGTLH AGKLTVDDDG
MILGANRSAL AQLGFATLDE IAGKPVTDVF NASLAEIVAR STRSSFYPVA IYRTHASSRF
FVVAQEPRDR AAREAIAPAR AEASNHDASS ALTRRPARAT RTASPLRQGT ARVEFGDAQI
ASQFDLGARV IDRGIAVLVH GETGSGKEVF ANALHAASER SNGPFVAVNC ASLPEHLIES
ELFGYRAGAF TGAQREGRRG KILQADGGTL FLDEIGDMPL ALQARLLRVL EEREVTPLGS
ESVVKVDFQL VSASHRDLNE LVESGQFRED LYYRLNGVML ELPPLRARKD KLALIRHLLE
KERTPALRLS ADVRQILLDS DWPGNIRQLR NVLRTATALC DGDELTTAHL PAWLVQREKN
LNRPRAAGAS TALSDTDDCA DMEEVSNAPL NAILQAEREA LLALLDKHRW NVSQVALALG
ITRNTLYRKM RRVNIKT
|
|---|
| |