| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5899 |
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| Symbol | |
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| ID | 6247471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010625 |
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| Strand | - |
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| Start bp | 416647 |
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| End bp | 419403 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642597607 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001862009 |
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| Protein GI | 186470691 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.224493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCAG CTAGCACTCG TCATCAAGCA GCGCCGGACT TGAACCGGCA TTTCACCAGG
ACGGCAGCCA TCGCTCTAGC CGCCGCTCTT GTCATTTGCC TCGCCGTCGG CGCCGCGATC
AGCGCGACGT TTTCGCGCGG CGCGGATGAT CTTCGGCTTC GCAACGCACT GACGGTGGCG
TCGGAGCTGG AGACCTTGCT CACGCTGCAC GTCGCCGCGA ACACCGATTT TCTGGAAGGT
GTCGGCATAG CGGGTTACAG CTCGCGCGGA TGGCCGATCA GGCGCGCCGC GGCGGTCGCG
GGAACATACG ATCGGCTGGA AAGGGAACTC ACGGGAGGGT CGGGCGCGCT GAAAAAGCTC
CGCCAGCTCC GTCGACTGAG TTCGGCCTGG CCGCAGGAGC TCGACTCGGC CGCGCGAAAC
CTCGCGCTCG CGAATGCCGG TGCGGAAGTT CAACCGACGC TGCTTCAACA CGCCAACAAA
ACCCTCAGTT CCATCATGAC GCTGATAGGG GATCTGCGCA GCGATGAACG CGAACAGATC
GCCGACATGC AGTTTCGCGC CCAAGGGCAA CTGGTCCAGC AAAGAATCTC GCTGGCCGTT
GCAGCAGCCG CGAGCGCTCT GCTGTTGTTG TTCGCGCTCT TCACCCGTCA GCGCGCGTCG
CTCACCAGGA TCACGTCGCA AATCGTGGCG ACCGAGGCGC AACGGCGGTT CCGCGAATAC
TTCGAACAGC ATCCCGTCTC GATGCTGATC TTCGACGTTC ACTCGTATGA GATCCTGACT
GCGAACGCTG CCGCTCAGCG TCAGTACGGC GCCACGCTGC AGCAGCTGCG CTCCATGCCC
GTCGACCAGC TGCGCCCGTC GTCGGACGTC GAAGAGTTTC GCCGCGATCT TCAGCAACAG
CTCGAATCTG GAAGTCGCGG CGGCACGGGC GGCGTTCGCC GGCATCGGCG CGCCGACGGC
GAGATCTTTT ACGTCGACGT CACGTATCAC CTGCTGGACT TCGCCGGACG GCAAGCATGC
TTCGTCACCG CCCACGACGT CACTGCACAC GAACATGCGA AGGAAAGCCT GCGAATCCGC
AGCCGCGCGC TCGATGCATC GAGGAACGCC GTCATCATCT CGCGCAAGAT CGATGGCAAC
AGCACGATCA CCTATGTCAA TGCGGCCTTC GAACGGATCA CCGGGCGTTC GGCGACGGAA
GCGATCGACG CCGAACTGTG GAACCTGATC GGTTGCGACA TTTCGACCCC CGACGCGCGC
TCGGTGCGAA TGGCCATGCG CGCGGAATGC GAAGGAGCGC GCCTGCTCCA ATGCCGCAAG
CCGGACGGTT CGATCTACTG GATCGATCTG CATGTGGCGC CCGTTCTCGA TGAACAGGAT
CGTCCGACTC ACTTCGTGAC CGTGTTCAGT GACGTGTCCG AACGCGTCCG TTATCAGGAG
CAACTGCGAA TCCAGGCGCA CGAGGACGCG CTGACACGTT TGCCGAACAG GCTGGGTTTG
AAGGCGACGC TCGCCGACAT GTTCGGACGG GCTGTCGCCG AAGGCAACAA GCTGGCACTC
GTCTTTCTCG ACCTCGACAA CTTCAAGGAG GTCAACGATA CGCTCGGCCA CACCGCCGGC
GATCAGGTGC TATGCGAAGT GGCACGCCGG TTGTCGGGCG CTGTGTCGCG CGATGAGATC
GTCGTCCGGT ATGCGGGCGA CGAGTTCGTC GCAGCGCTTT ACGGACGCGG CGACATCGAC
CGTTTCATGG CGGCAGCGAC AGCGATGAAG GAAACCCTGA CGCACGCGCT TACCGTGGAC
AACCGGCTGA TCGTGCCGCA GGCAAGTGTC GGCGTGGCCG TCTTCCCGGA TCACACGCAA
GACCCCGACA CGCTGCTGCA GTATGCCGAC GCCGCGATGT ATCGGGCAAA GTCGGCGGGA
CCGAACAGCA TCCTGCTGTT CAACCATGAC ATCGCGATCC AGGACAACAG GCGTGCAACG
TTGGCCCAGG CGCTGCGACA TGCCGTGGCC TCGGAAGCTT TTTCGCTCGC TTACCAGCCG
AGAGTCAATC CGGCGACAGG CAAGGCAAGC GGATTCGAAG CGCTGGTCCG CTGGCACGAT
CCGGAACACG GGGATATCAG CCCCTCGTTG TTCGTTCCGA TCGCGGAGGA AACGGGCCTC
ATCGTCCAGA TCGGACAGTG GGTATTCGAG CAGGCCTGCC GTCAGACGAG AACATGGGCG
GCGAGCCTTC ATCCCGACAT CGTGGTGTCC GTCAACGTAT CGCCCGTACA GTTCGAACGC
TCTGACTTGC CCGCGATGAT CGCTTCCACG CTGGAGCGCA CGGGCGTCAG CGCGCGCAAC
GTCGAACTGG AAATAACCGA AGGCGTGCTG ATGGCGCCCG GATCGCTGGC CACGCTGCGC
GCGTTGCGAG AGATGGGCCT GTCGATTGCA ATCGATGACT TCGGTACGGG CTATTCGAGC
CTTGGCTATA TCCGCAGCTT TCTTGCCGAC CGGCTGAAGC TGGACATGTC GTTCGTTCAG
GGAATCGGTC GCTCGCACGC CGATGAAGTC ATCGTCAGGG CCGTCCTGGC GATGGGCCGG
ACGCTCGGCA TGCGGGTGGT GGCGGAAGGC GTCGAAACGC TCGGCCAGCT CGAGTTCCTG
ATCGACAACG GTTGCGACGA AGTGCAGGGT TACTGGTTCG CTCGCCCGAT GGATGCGAAC
TGGGCCCATG CGTACCTGGT GCAGGACAGC GTCCGCGCAT CGACGCGCGT CATGTAA
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| Protein sequence | MDAASTRHQA APDLNRHFTR TAAIALAAAL VICLAVGAAI SATFSRGADD LRLRNALTVA
SELETLLTLH VAANTDFLEG VGIAGYSSRG WPIRRAAAVA GTYDRLEREL TGGSGALKKL
RQLRRLSSAW PQELDSAARN LALANAGAEV QPTLLQHANK TLSSIMTLIG DLRSDEREQI
ADMQFRAQGQ LVQQRISLAV AAAASALLLL FALFTRQRAS LTRITSQIVA TEAQRRFREY
FEQHPVSMLI FDVHSYEILT ANAAAQRQYG ATLQQLRSMP VDQLRPSSDV EEFRRDLQQQ
LESGSRGGTG GVRRHRRADG EIFYVDVTYH LLDFAGRQAC FVTAHDVTAH EHAKESLRIR
SRALDASRNA VIISRKIDGN STITYVNAAF ERITGRSATE AIDAELWNLI GCDISTPDAR
SVRMAMRAEC EGARLLQCRK PDGSIYWIDL HVAPVLDEQD RPTHFVTVFS DVSERVRYQE
QLRIQAHEDA LTRLPNRLGL KATLADMFGR AVAEGNKLAL VFLDLDNFKE VNDTLGHTAG
DQVLCEVARR LSGAVSRDEI VVRYAGDEFV AALYGRGDID RFMAAATAMK ETLTHALTVD
NRLIVPQASV GVAVFPDHTQ DPDTLLQYAD AAMYRAKSAG PNSILLFNHD IAIQDNRRAT
LAQALRHAVA SEAFSLAYQP RVNPATGKAS GFEALVRWHD PEHGDISPSL FVPIAEETGL
IVQIGQWVFE QACRQTRTWA ASLHPDIVVS VNVSPVQFER SDLPAMIAST LERTGVSARN
VELEITEGVL MAPGSLATLR ALREMGLSIA IDDFGTGYSS LGYIRSFLAD RLKLDMSFVQ
GIGRSHADEV IVRAVLAMGR TLGMRVVAEG VETLGQLEFL IDNGCDEVQG YWFARPMDAN
WAHAYLVQDS VRASTRVM
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