Gene Bphy_5744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_5744 
Symbol 
ID6247320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010625 
Strand
Start bp247572 
End bp250334 
Gene Length2763 bp 
Protein Length920 aa 
Translation table11 
GC content62% 
IMG OID642597456 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001861858 
Protein GI186470540 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATGGC TTGACCAACC CCGCACGCTG GAGATCGTCA GCGCAGGCCT GCCGAAGTGG 
CAGGACGAAT GCCTGTTCAC CGTATCGCGC CTGACCGGCA CCGAAAAGCT CGGCAGGCTC
TACGACTACA CCGTCGAGAT TGCGACGAAG GACGATATCG GCCTGACCGT GCATGAGGCC
AGGGAGATGG TCGAGGTCGA CAAGCTGGTC GGCAAGCAGG TGACGGTGAA GATCGCTACC
GAGGGTAGCG GCACCTACGA GACGGGAACA ATCGGCGTGT CCCCGTCGAT CAATATCGGC
GCAGGCGTGC GCGAGATCAC CGGCCTGATC GTCTCGGCAG AGTGCGTCGG CTCGGATACG
CGGCGGGCGT TCTACCGCTT GCGGATTCGC CCATGGCTCT TTTTAGCGAC CCTCAACCAG
GACTCAAGAA TCTTCCAGGA CCTCACGGTC AAGGAAATCT CCGAAACGAT CCTGAAAAAG
TATCCGTTTC ACTATGAACT GCGCCTGGCC GGCCCCGGCT TTGGCCGGCA GTATCCGAAG
CGCGACTACC AGCGCATGTT CTGGGAGAGC GACTGGGGCT ATCTGAACCG CCTGTGGCAG
GAATGGGGCA TCACGTTCTT CTACGATGGC CCGACGCTCG TGCTGTGCGA TTCGACCGCC
GCCTACAAGA AGCACGGCCC CGCGTATGCA ACGCTACGAT ACCAGGACCG CGACGGCCAG
CGCATTGACG AGGAACACGT CCACCAGTTC GAGATTGCGC GCGCCCTGAC CACGGGCAAG
GTCAGCGTCA CCGACTACGA CTACACGCAG TCGCGCGCGA ATCTCGCCGC GAAGGATTCG
GACTACCGCG AGCGCGCGAA CGACAACATC GAGCACTACG CCTGGGGCGA CTACTCGCAG
CCGCTGGCCG GGGCGATGGG GACCGCCGCG CAGCCCAATG AGGTGGACTT CGAGGGCGAG
CACCTGGCAC GGGTGCGGCT GGAGGCAAAG CGGGCGAAGA GCCTGCGCGG CAAGGGGCGC
GGCAACATGC GCGGGCTGAG GGTGGGCTAC ACGTTCCACC TGGAAGGCTA TCCGCTCGCA
CCGGGCAATG GCGAATACCT GGTCGTCGCG ACGAAGATCG AGATCGTCAA CAACGACACG
GTGACGAACC GGGGTGCGCT GCAACGTCAG TACACGTGCG ACACGCAGTT CACGGTGCAG
CCCGCCAATA CATATTTCCG CACGCCGCAG AAGGCGAAAA AACCGCGCTC GCACGGCGAG
GTGGCGATTG TGACGGGCTA TTCGGATTCA AAAATCTGGA CCGACAGGTA TGGCCGCGCG
AAGGTCTGGT TCCCGTGGGA TCGCGAGGGC CAGCAGGACC AGGACTCAAG CTGCTGGGTG
CGGGTGTCGT CGCCATGGCA GGGTGCGAAC TACGGCGCGA TCTACATTCC GCGCGCGGGC
CACGAGGTGG TGATCGGGTA TCAGGACAAT GATCCGGACA AGCCGTATAT CGCGGGACGG
CACGTGAACC AGTTCCACGA ACCGCCGTGG CCGCTGCCCG CCAACCAGGC GCTTTCGGGC
TGGCTGAGCG AGGACCTGGA GGGTCCGACG ACGAACAGCG TTGTCACCGA CGATACGCCC
GGCAAGCTCC AGGTGCAGGT GGCGAGCGAC CACGCGGCCT CGCGCCTGGT GCTGGGCAGC
AATACGCGCA TCGACCGGCG CAAGGGCCGC AGCGAGGCGC GCGGCGAGGG GTTCGAACTG
GCGACCGAGG CGCATGGAGT CGCCCGGGCC AACCTGGGCA TGCTCATCAC GACAGAAAAG
CGAGAAGGCG CGAGCGCACC CGTAAAGGAC ATGGTCGAGA CCGTGCAGCG GCTTACGCAG
GCGCGCCAAC TGCACGAGGA CCTGTCGCAG GCTGCCCGGA AGCACACCGC ACAGACTCTC
GAGGCAAACC AGAGTGAGGC CACGACCACC ATTAAGGTGC AGAACGACGC GGTCAAGGGT
GGTGTGAAGA GCGTGGCCAA TCCTTCGCCC GAGATGACAC GTCCCGACGT GGTGATCTCC
AGCGCTTCAG GTATCGCAAC CACTGCCACG GACAGTACGC ACATGGCGAG CATGAATGAT
CATGCGGTGA CGACGGGGCG GGACTTCAGC ATGGCTGTGG GGCGTGCGTA CCACGCTTCA
GTACGCGGCT CGATCTCACT GTTTGCATAT CAGGACGCCA TGAAATTCGT CGCTGCGAAA
GGGCCGGTGA TCCTGCAATC GCGGAGCAAC AACATTGAAA TCATCGCTGA TCAGGTGCTG
AAACTGACCA GTGCAAAGAA GCGCATCGAA ATTACAGCGG CAGAGGAAAT CGTGTTGCAG
GCGCGAGGCA GTTACATCCG TATCAATGGA GCGGGTATCG AGCACGGCAC CCCAGCGAAG
TGGATCGCTC ACGCAGCGAG CCACGCTTTG CCGGGTCCAA AGTCGATGCC GGCCTCTCTA
CCCGAGATGG ATATGCCCAA AGCGTTCAGT AATCGGCTCG ATGCTTACGA TATCTACTGG
CTCAGGGATT TTAACGACGT CGAATATGCA GCGAGGCGAG CCAATGGTGA TCTCATTGCG
CAGGGTACGC TTGATCAGGA TGGGAGGACA TCTCGCCTCT CAACCGACCA ACCAGAAACC
ATTCAGGTGC TTGTGGGGAC GCGGGGAGCA TGGCTGGTTG AAACTGATGG AAGAGAAAAC
AATCCGCAAT CAGATGACCC TTTGCCGGAT GACCCAAATC ACTACGTCAA TTTGAGCACG
TAA
 
Protein sequence
MSWLDQPRTL EIVSAGLPKW QDECLFTVSR LTGTEKLGRL YDYTVEIATK DDIGLTVHEA 
REMVEVDKLV GKQVTVKIAT EGSGTYETGT IGVSPSINIG AGVREITGLI VSAECVGSDT
RRAFYRLRIR PWLFLATLNQ DSRIFQDLTV KEISETILKK YPFHYELRLA GPGFGRQYPK
RDYQRMFWES DWGYLNRLWQ EWGITFFYDG PTLVLCDSTA AYKKHGPAYA TLRYQDRDGQ
RIDEEHVHQF EIARALTTGK VSVTDYDYTQ SRANLAAKDS DYRERANDNI EHYAWGDYSQ
PLAGAMGTAA QPNEVDFEGE HLARVRLEAK RAKSLRGKGR GNMRGLRVGY TFHLEGYPLA
PGNGEYLVVA TKIEIVNNDT VTNRGALQRQ YTCDTQFTVQ PANTYFRTPQ KAKKPRSHGE
VAIVTGYSDS KIWTDRYGRA KVWFPWDREG QQDQDSSCWV RVSSPWQGAN YGAIYIPRAG
HEVVIGYQDN DPDKPYIAGR HVNQFHEPPW PLPANQALSG WLSEDLEGPT TNSVVTDDTP
GKLQVQVASD HAASRLVLGS NTRIDRRKGR SEARGEGFEL ATEAHGVARA NLGMLITTEK
REGASAPVKD MVETVQRLTQ ARQLHEDLSQ AARKHTAQTL EANQSEATTT IKVQNDAVKG
GVKSVANPSP EMTRPDVVIS SASGIATTAT DSTHMASMND HAVTTGRDFS MAVGRAYHAS
VRGSISLFAY QDAMKFVAAK GPVILQSRSN NIEIIADQVL KLTSAKKRIE ITAAEEIVLQ
ARGSYIRING AGIEHGTPAK WIAHAASHAL PGPKSMPASL PEMDMPKAFS NRLDAYDIYW
LRDFNDVEYA ARRANGDLIA QGTLDQDGRT SRLSTDQPET IQVLVGTRGA WLVETDGREN
NPQSDDPLPD DPNHYVNLST