| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5652 |
|---|
| Symbol | |
|---|
| ID | 6247158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 132433 |
|---|
| End bp | 135618 |
|---|
| Gene Length | 3186 bp |
|---|
| Protein Length | 1061 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642597370 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001861772 |
|---|
| Protein GI | 186470454 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCA ATCTATTCTT CCGCCTGCTT GCGCGTCTGC GCGTGGGACG CAAGCTGCTG
CTGATCTATC TGCTCGATCT GAGCGCCGTG GTGTACATCA GCGGTATTCT GATCCACGAG
AAATATATTT CGATCGACTT TTCCAACAAG GAGATCGTCG GCAACGCATA TATCGGCACG
GTAAGCGACG CGCTGATCGA CGTCGCGATG GCAGGCGCGG GGCGGCGTCC GCCCGCGGCG
CGTCTCGAGG AGGCCCAGTC CGAACTGAGC CATACCGAGG CGCGGTACGG TACGCACCTG
CAAAGCGCGG AACTGAATGC GCGCGTGCGC GCGGCGCTCG ATGCGCTGGC TCGCGAACGG
CAGCCCACTG CCGCACAGAT CAACGAAGCA CTCGACGCCT GCCGTGAGCT CGTGACGCGC
GTCGGCAATC AATCGAACCT GATTCTCGAT CCCGACCTCG ACAGTTACTA CGCGATGTCG
CTGTCGATCC TGCGCTATCC GGCACTGCTC GAATCGGTGA ACCGCATTGG CCGGCAGTTG
CATGAAGGCG CGCACGCGGT GCGCTCGCAC GACGAACTGC GCACGCGCTA TCTCGTGCTC
GAGGGGCAGC TCGATGCCGT GCTGCAGGGC ATGCGCTCCG ACTTCTCGGA AGCAGGCGCG
GCCAACCACG CGCTCGACTC GACGCTCGGA CCGTCGATGG CACGCATGCT CACGGCCGTC
GAATCGTACC GTCACGCGGC GCGCATCGTC GTGGACAGCA CCGGCCAGGT CGATCCTGCA
CTGCTGTCCA TCGTCGACGT GCAGCAGCAG ACGCTCGTGG CCAGCGTGCG CGACACCTGG
CGGAGCACCT CGGTTCAGCT CGATGGCCTG TTGCATGCAC GCGTGCGGGG CTTGTTCTCG
CGCATGTGGC TGCATCTCGG CACTGCTCTC TTCCTGTTGT GCAGCATTCT GGGCATGGTC
TATTTCGTTG CGCAGCAGAT TTCCAGGCCG TTGCGTCAGC TCGCGCGCGT GATGGACACG
GTGCGCCGGA CGGGCGATCA CGCGGTCCGT GCGAACTGGC ACAGTCAGGA CGAAATCGGC
CAGCTGGTGC GCGGCTTCAA CGATATGCTC GAACAGCTCG ACCGCGAGCG CGACGTGCAG
AAGGAACTCG CGGCCACAGC GCGTGCGTCC GCCGCGCAGC ATGCGCTCGT CGAATCGACG
CCCGTGCCGA TGATGGTGAC GGCCGTTCCT GGCCATGAAG TGCTGCACGC GAACCAGCCT
GCGCTCTACT GGCTCAACGG CTGCACGACG GACCCGTGGG CGTATGGCCT GGATTCGTCG
GTGCGCGCGC GGTTCTTCCA GCAGCTGTCC GACCGCGATG CCGTCGACGA ATTCGAAGTG
CGCTGGAAAG CGAGCACGGA GCCGACATGG GCGATGCTGT CCGCGCGGCG TCTGAACTTC
CAGGGCCGCG ATGCCGTGCT CACGGCTTTC ACGCCGATTA ACCAGATCAA GCTGATGGAG
CAGCGGCTCG AGTTGTGGGC GAAGGTGTTT GAGGCGTCGT CGGAGGCGAT CCTGATTCTC
GATCAGGAGC GGCGTCTGCT GACGGCCAAT GCGTCGTTTT ATCGGGCGAC GGGTTATCGT
GCCGAAGATA TCGCGGGCAA GCCGCCCGCG TTCATCGTCG CGGGGGCGAA TAGCGGCGCG
GTGATCACGG CGCTCGCGAC GCTCGTCGAC CGCTCCAGCT CATGGAACGG CGAAGCGCAA
ATCAGGCGGC GTCAAGGCGG CGACTATCCG GCGTGGCTGA TGATCAGTGC AGTGCGCGAC
AAGCGCGGCA GCGTCTCGCA CTACATCTGC ACGCTGATCG ATATCACCGA TCGCAAGAAG
AGCGAGGCGC GCATCGAGTT CCTCGCGGAG CACGACGTAT TGACCGAGCT GCCGAATCGC
GCGCTGTTCA CGAAGCGGCT GGGCGTCGTG CTCGACAATG CCAAACACGC GCAACAGCGC
GTGGCTGTGC TCTTCATCGA TCTCGACCGA TTCAAGGATA TCAACGATTC GCTCGGCCAT
CATATCGGCG ATGGCCTGCT GCGTTCCGTC TCGCGGCGGC TCGTGCAAGC GGTGCGCAGT
GGTGACACCG TCAGCCGTCT GGGCGGCGAC GAGTTCACGA TGGTGCTCGC CGATGCGGGC
AGCGCCGCCG ATGTCGCGCG CACCATCGAC GAACGATTGC TGCCGCTCGT GCGGGAGCCG
CATGCGATCG GCGGTGTCAC GCTGCAGGTT GCATGCAGCG TGGGCGTCGC GCTGTATCCC
GACGACGGCG CCGACATCGA AACGCTGATG CAGAATGCCG ATGCCGCGAT GTATCAGGCA
AAAGCCGCGG GACGCAATCT GGTGAAGTTC TTTTCGCCCG ATATGGCCGA GCGCGCGCGG
CAACGGCTCG CGCTTGAAGC ATGCATGCGC ACCGCAATCG AGCGGCGCGA ATTGCGCCTC
GCCTATCAGC CATGTCTCGA TGCGCAAACG GGCGCGCTCG TCAGCGTCGA GGGCCTGTTG
CGCTGGACTC ATCCGCAACT GGGCGCGGTG ACACCATCGC AGTTCATTCC CATCGCTGAA
GAAACGCGGC TCATCATTCC AATCGGCGCG TGGGTGATCG ACCAGGCGTG CAGGCAACTT
GCGCGCTGGC GTAACGCAGA GATGGGCGAA CTGCGCATGT CGATCAATCT GTCGGCGATC
CAGTTGCGCG ACGCCGATCT CGTCGAGACC TTGAGACACA GTCTCGTCAC GCATGGCGTC
GCGCCGCAGC GGCTCGAACT CGAGATCACC GAGACGGTGC TGATGGATAG CGCGGAGAAC
TACCTCGATG CGATTTGCGC GATTCGCGCG TTGGGTGTGA AGCTGTCGCT TGACGATTTC
GGCACCGGGT ATTCGAGCCT TAGCTATCTG AATCGCTTTC CGCTCGATCG ATTGAAGATC
GACAGGGCGT TCGTGCGCGA CATGCTCGAT GCCCCCGCCG ATCTCGCCGT GATCAAGGCG
ATCATCGAGC TTGGACACGA ACTGGGCTTG CGCGTGGTGG CCGAGGGCGT GGAAAGCGAG
GATGAAGCGA ACACGTTGCG CAGCATCGGC TGCGACGAAT TGCAGGGGTT TCTGTATTCG
GCGGCACTGT CAGCTGAAGA ACTGGAAACG TGGGCGCAGC AGCGTATCGA AGCGGATGTC
GAATGA
|
|---|
| Protein sequence | MKRNLFFRLL ARLRVGRKLL LIYLLDLSAV VYISGILIHE KYISIDFSNK EIVGNAYIGT
VSDALIDVAM AGAGRRPPAA RLEEAQSELS HTEARYGTHL QSAELNARVR AALDALARER
QPTAAQINEA LDACRELVTR VGNQSNLILD PDLDSYYAMS LSILRYPALL ESVNRIGRQL
HEGAHAVRSH DELRTRYLVL EGQLDAVLQG MRSDFSEAGA ANHALDSTLG PSMARMLTAV
ESYRHAARIV VDSTGQVDPA LLSIVDVQQQ TLVASVRDTW RSTSVQLDGL LHARVRGLFS
RMWLHLGTAL FLLCSILGMV YFVAQQISRP LRQLARVMDT VRRTGDHAVR ANWHSQDEIG
QLVRGFNDML EQLDRERDVQ KELAATARAS AAQHALVEST PVPMMVTAVP GHEVLHANQP
ALYWLNGCTT DPWAYGLDSS VRARFFQQLS DRDAVDEFEV RWKASTEPTW AMLSARRLNF
QGRDAVLTAF TPINQIKLME QRLELWAKVF EASSEAILIL DQERRLLTAN ASFYRATGYR
AEDIAGKPPA FIVAGANSGA VITALATLVD RSSSWNGEAQ IRRRQGGDYP AWLMISAVRD
KRGSVSHYIC TLIDITDRKK SEARIEFLAE HDVLTELPNR ALFTKRLGVV LDNAKHAQQR
VAVLFIDLDR FKDINDSLGH HIGDGLLRSV SRRLVQAVRS GDTVSRLGGD EFTMVLADAG
SAADVARTID ERLLPLVREP HAIGGVTLQV ACSVGVALYP DDGADIETLM QNADAAMYQA
KAAGRNLVKF FSPDMAERAR QRLALEACMR TAIERRELRL AYQPCLDAQT GALVSVEGLL
RWTHPQLGAV TPSQFIPIAE ETRLIIPIGA WVIDQACRQL ARWRNAEMGE LRMSINLSAI
QLRDADLVET LRHSLVTHGV APQRLELEIT ETVLMDSAEN YLDAICAIRA LGVKLSLDDF
GTGYSSLSYL NRFPLDRLKI DRAFVRDMLD APADLAVIKA IIELGHELGL RVVAEGVESE
DEANTLRSIG CDELQGFLYS AALSAEELET WAQQRIEADV E
|
|---|
| |