Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_5324 |
Symbol | |
ID | 6246809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | + |
Start bp | 2461808 |
End bp | 2463196 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642597045 |
Product | type II secretion system protein E |
Protein accession | YP_001861448 |
Protein GI | 186474106 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0350722 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.000466022 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCATTGC GCGATCAACT GAGATTGCAG AGTGTGTCGA TCAACGGCGC GGCGGCGGGA GCCGCTGCCG ACATGACGGC AGCAGGCGGC TTCGCCGAGA GCATGGCCGC GCGGCGCGCG TATCAGCAGC TGAAGATGAA CGTGCACGAG AAGATCATCG ACCGCGTCGA ACTCGACAAA CTGCAGCGCC TCACGCCCGA GCAGATCAGG CGCGAACTCG CGCAACTGGT CGAGCGCATT GTCGACGAAG ACAAGATTCC AATGAACGAG ATCGAACGCC GGCGTCTCGC GCAGGACGTG CACGACGAGA TGTTCGGCCT CGGTCCGCTC GAACCGCTGC TCGCCGACCC TACGGTATCG GACATTCTCG TCAACACGTC GCAGCACGTG TACGTGGAGC GGCGCGGCAA GCTCGAGCGC ACCGACATCA CCTTCTTCGA CGACGCGCAT CTGATGAAGA TCATCGAGCG CATCGTGTCG CGGGTGGGGC GGCGCATCGA CGAATCGACG CCGATGGTCG ACGCCCGGTT GCCCGACGGC TCGCGCGTGA ACGCGATCAT TCCGCCGTCC GCGATCGACG GGCCGCTCGT GTCGATCCGC CGCTTCGCCG TGAATCCGTT GAAAGTGGAG GACATGGTGA AGAACCAGTC CTTCACCCCC GCGATGGCGC AACTGCTCGA AGCGCTGATC AAGGCGAAGC TGAACGTGCT GATCTCGGGC GGCACGGGCA GCGGCAAGAC GACCCTGCTC AACCTGCTGT CGGGCTTCAT TCCCAACGAC GAGCGCATTG TCACCATCGA AGACGCCGCC GAACTGCAAC TGCGCCAGGA ACATGTGCTG CGGCTCGAAA CGCGGCCGCC GAACATCGAA GGCAAGGGCG AAATCTCGCA GCGCTCGCTG GTGAAGAACG CGCTGCGGAT GCGCCCAGAC CGCATCGTGC TCGGCGAAGT GCGCGGCGCG GAAGCGCTCG ACATGCTGCA CGCAATGAAC ACGGGCCACG AAGGATCGAT GGCGACGCTG CACGCGAACA CCCCGCGCGA CGCCCTGACG CGCCTCGAAA ACATGGTGGG GATGGCGGGC CTGACGATGC CGATCAAGGC GATGCGTCAG CAGATCGCGT CGGCGATTAC GGTGGTCGTG CAGGCGTCGC GCCTCACGGA TGGCCGCCGC AAGCTGATGA GCATCCAGGA AATCACGGGG ATGGAAGGCG AGATCATCAA CATGCAGGAG ATCTTCACCT TCAGGCGCAC GGGTGTGGCG GAAGACGGCA CGGTCAAAGG CTACTTCTGC GCGACGGGCG TTCGGCCCAA GTTCGCCGAC CGGCTTGCCG CGTTCGGTCT CGCGTTGCCG GATCAGATGT TCGACCCGTC GCGGCGCTAC GAAGTCTGA
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Protein sequence | MSLRDQLRLQ SVSINGAAAG AAADMTAAGG FAESMAARRA YQQLKMNVHE KIIDRVELDK LQRLTPEQIR RELAQLVERI VDEDKIPMNE IERRRLAQDV HDEMFGLGPL EPLLADPTVS DILVNTSQHV YVERRGKLER TDITFFDDAH LMKIIERIVS RVGRRIDEST PMVDARLPDG SRVNAIIPPS AIDGPLVSIR RFAVNPLKVE DMVKNQSFTP AMAQLLEALI KAKLNVLISG GTGSGKTTLL NLLSGFIPND ERIVTIEDAA ELQLRQEHVL RLETRPPNIE GKGEISQRSL VKNALRMRPD RIVLGEVRGA EALDMLHAMN TGHEGSMATL HANTPRDALT RLENMVGMAG LTMPIKAMRQ QIASAITVVV QASRLTDGRR KLMSIQEITG MEGEIINMQE IFTFRRTGVA EDGTVKGYFC ATGVRPKFAD RLAAFGLALP DQMFDPSRRY EV
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