| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5279 |
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| Symbol | |
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| ID | 6246766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 2405426 |
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| End bp | 2407426 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642597002 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_001861405 |
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| Protein GI | 186474063 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.164085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0978812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACG ACCACGATCA GGTGCTGTTT GCCCGATTCG GAACCAGCAG TCCTTGCTGG
CGGCTTTCGA GCGACAGCAA TGCGCTCGAA CTCACGCCCG AAACGGAAGA CGGCGCCGCC
ACGGTCGCGA TTGCGCTGTC CGGCGCGCAG GCTGCAGAGA TCCGCCGCCT CACGGGTGTT
ACCTCGCACC TGACAATGGA CGTTCGCCTG TTCGGCGAAG CGCTGCGTCT GCACCTCGTC
GGCAAGAAGC TCAATAGCAG CACCTGGGCG GGCACGGCGT CGGCGTACGA AGACACGGAA
TCCGTCGCGC GCGACCTCGT GCACGGCCTG TCGTTTGCCG AGCAGGTCGT GTCGGAAGTC
AATTCCGTGG TGGTGATCGT CGACCGGGCC GGCCGCATCC AGCGTTTCAA CCGGCTCGCC
GAAGAACTGA CGGGCATGAA AGAAGAAGAC GTGATCGGGC GCAATGTGTG GGCGCTGTTC
ATGTCGTCGG AAGCGGGCGC GGCGTCGAGC CAGAACATCT CCGGTTTCTT CCAGCACGGC
GTCGCGTATG AAGTCGAGCG CCGCGTGCGC ACTGTGCACG GCGAGCGGCT TTTCCTGTTT
CGCAACAAGT TCGTGATGAG CGGTAGCGGC GTCGACGAGC AGTTCCTGAT CTGCTCGGGC
ACGGACATCA CGAAAGAACG CAACGCCCAG GAACGGCTGT CCGAACTCGC GAATACCGAT
TCGCTGACGG GTCTGCCCAA CCGCAACGCG ATCCACGACA AGACCCGCGC GGCGATCGCC
AGCGCCGCGC CGGGCAACGC CGTCGGCATT TTGTTTCTCG ATCTCGACAA CTTCAAGAAG
GTCAACGACC ACTACGGCCA TGTGTTCGGC GACCGGCTGA TCCAGGACGT GTCGTCGGCC
GTGCGCGAGT GCCTCGATGG CGCCGACACG CTCGCGCGTC TGGGCGGGGA CGAGTTCATC
GTGCTGTCGC CCGTCGCGAC GGTCGCGTCG ATGGAAGCGA TGGCGCAGCG CATTCTGGAG
CGGCTGCGCA TGCCGTTCAG TCTGGGGCTC GTCGAGGTGT ATACGGGCTG CTCGATCGGC
ATCGCGATGT TTCCCGAGCA CGGCGACAGT CTCGAAGCGT TGATCCGCGC CGCCGACACG
GCCATGTACG TCGCGAAGGA CGACGGCAAG CGCACCTACC GCGTGTTCTC GCCGGAGATG
AACCGCAAGG TGGCCGAGTA TATGTGGCTC GACACCAATC TGCGGCGCGG GCTCGAAGAA
GGCCAGCTGA CGCTGCACTA TCAGCCGAAG CTGTCGCTCG CGACGGGCGC CGTGTACGGC
GTCGAGGCGC TGGTGCGCTG GAATTCGCCG GAACGCGGGC AGATCATGCC CGCCGCGTTC
ATCCGTTACG CGGAAGAATC GGGGCTCATC GGGCCGCTCG GCCGCTGGGT CATGCAGACG
GCGGCCGAAC AGGCTGCGCA GTGGAAGGCG CGCGGGTTGT CGCTGCGGGT CGCCATCAAC
GTGTCGGCGC GGCAACTCGT GGATACGGCG GTCGTCTCGC ACTTCACCGA GGCGCTGCAA
CGCGCGCAGC TCGACCCTTG CCTGCTCGAT ATCGAGTTGA CGGAAAGCTG CCTGATCGAA
GACGAAGCGG CTGCCATCGA CCTGATCACA CAATTCCGCG ATCTCGGCGC GCAAGTCCAT
CTGGACGATT TCGGCACGGG CTATTCGTCG CTGTCGCAGC TGGGGCGCAT TCCCCTCGAC
GTCATCAAGC TGGACCGCAG CTTCGTGAGC TCGATCAACG CGGACAGCAA ATCTCAGGCG
CTGGTGCGCT CGATGGTGGC CGTCGCGCAG GCGCTGCAAC TGAAGGTGGT GGCGGAAGGC
ATCGAAACGG AGTCGGAGGA GCTGTTCATG AAGGGGCTGG GCGTCGAATA CGTGCAGGGC
TACCTGTACG GCAAGCCGAT GCCCGCGGCC GACTTCGAGC GCTGGCTGCA TGACAGGCAG
AAGATCCCGT TGATCGCCTG A
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| Protein sequence | MNDDHDQVLF ARFGTSSPCW RLSSDSNALE LTPETEDGAA TVAIALSGAQ AAEIRRLTGV
TSHLTMDVRL FGEALRLHLV GKKLNSSTWA GTASAYEDTE SVARDLVHGL SFAEQVVSEV
NSVVVIVDRA GRIQRFNRLA EELTGMKEED VIGRNVWALF MSSEAGAASS QNISGFFQHG
VAYEVERRVR TVHGERLFLF RNKFVMSGSG VDEQFLICSG TDITKERNAQ ERLSELANTD
SLTGLPNRNA IHDKTRAAIA SAAPGNAVGI LFLDLDNFKK VNDHYGHVFG DRLIQDVSSA
VRECLDGADT LARLGGDEFI VLSPVATVAS MEAMAQRILE RLRMPFSLGL VEVYTGCSIG
IAMFPEHGDS LEALIRAADT AMYVAKDDGK RTYRVFSPEM NRKVAEYMWL DTNLRRGLEE
GQLTLHYQPK LSLATGAVYG VEALVRWNSP ERGQIMPAAF IRYAEESGLI GPLGRWVMQT
AAEQAAQWKA RGLSLRVAIN VSARQLVDTA VVSHFTEALQ RAQLDPCLLD IELTESCLIE
DEAAAIDLIT QFRDLGAQVH LDDFGTGYSS LSQLGRIPLD VIKLDRSFVS SINADSKSQA
LVRSMVAVAQ ALQLKVVAEG IETESEELFM KGLGVEYVQG YLYGKPMPAA DFERWLHDRQ
KIPLIA
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