| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5239 |
|---|
| Symbol | |
|---|
| ID | 6246729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2364285 |
|---|
| End bp | 2366894 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642596965 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001861368 |
|---|
| Protein GI | 186474026 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0570546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGATC CTGCTCATTT CCTTCCATCG TTTGTCTGGC GCGCGGATCG GGCCGGCGCG
GTGCGCTACG TCAACCCGTG GGCGTCGCGC TACCTTGGGC TGCCTGCACC GCATATCGTT
GGCCGCAACT GGCATGAATT CGTTCATCCC GACGACATCA ACCCCGTGCT CGACGCGTTA
CGTCAGATGC ACGACGGCAA CCTGCTGCGC AATGTCGACG TGCGCCTTTT GCGCGGCGAC
GGAGTTTTTC ACTGGCACAC GCTGCATCTG CAGGCACAAC GCGATGAAAG CGGCCGCATT
GGCGATACGG TGGGCGTGGC GACGGATATC CATCATTGCC GGCACGCGTG GGCGATGTAC
GAAGCGAGCG AACGCCGGTT GAAGGCCGCG TGCCAGGGCG CCGGCATGGG CGCATGGGAA
TGGGACATGA AGAGTCGCCA TGTGCGGATG ACCGAGCAGC TCGCCGAACT CTATTCTTTT
CCATCCGGCA CCGATGCCGT CACGCTAACC GATCTGTGGA ACCGCGTCGC GCCCGAGCAG
CGTGAGCCGT TCCAACAGGA GGTTGCACAG GCGCTCGAGC GTGGCGGCCC GTTCGAGCTC
GATTTTCAGC TTGACGGCAC CGCTGCGCCG CCGCGTTGGC TGCGCATGCG TGGCCATCCG
GAATTCGACC AGCAAGGCGT GCTTTCCTGC GTGCATGGCG TCACATTCGA TATCTCGAGG
CAGCGCGCGG CTGAAGAACG GCTCATTCTG AGCGAGCGCC GCTATCGAGC GCTGGTGGAG
TCGACGGGCG CTCTCGTCTG GTCGGCGCAT GCGGATGGGG AAATCCGTCC TGCCGATGAG
CCGTGGGGCA AATTCACGGG CGCCGACCCG CAGCGACTGG AGAACTGGGG ATGGCTCGAC
TTCGTTCACC CCGACGATCG CGAGATGGCG CGCGAGGCCT GGCTGACCGT CTTGCGCGAC
GGCACGGCGG GCACGATAAC GTTTCGTATG CGCCGCTACG ACGGCCATTA CCGGATGGTT
CAGGCGCACG CCGCTCCTCT GTACGACGCT CACGGCACAC TGCAGGAGTG GTTCGGCACG
ACAACCGATG TCACCGCCCA ACATGAAGCT CAGGCGGCGA TCGAAGCCCG CAGCCTGCGT
CTGACCGTCG CGATGCAGGC GGCAGAAATC CATATCGTCG CTGTCGATCT CACGTCGTGG
ACGCTGTCGT TCGAAATGGG CGGCGAGCCT CGCGTGGGCG AAACGCTGAC GTACGAGGCC
GCGCTTTCGC GCATCCATCC TGACGATCGT CCCGTGCTCG ACGGTTACGT GCGCCAACTC
GCGACTGGCG GCGATCCCGG TGCGCATTTC GAGTTTCGCG TGCTGAACCC GCGCGGGGAA
CAATGGATGG AAGGCAGCGC ACTGCTTCAG CGCGGCGCCG ACGGCAAACC ATTGCGGCTC
ATCGCGAGCG TCGTCGATAT CACCGAACGC AAGCGCATGG AGTTGATGCT GCGCGAAACG
GACCGGCGCA AGGACGAATT TCTCGCGATG CTGGCGCACG AACTGCGCAA TCCGCTCGCG
CCGATACGTA CAGCCATTGC GCTGTTCGAG AAGCATGACG GCAAGGATCA ACGTTCCGCC
GACCTCATCG AACTGATGCG CCGACAGACC GAACACATGA CGCGCATCGT CGACGACCTG
CTCGAAGTGT CGCGCATCAC GCAAGGCAGG ATCGCGCTTC AGCTCGAGCC GATTCTTGTC
GGCACGGCCG TCTATCACGC AGTCGAGGCG ATGGCTGCAT CCGTCGAAGC GCGGCGACAG
CACATTCAGG TGGACGTCTC CGACGCGACG GCGTGGGTTC GGGGCGACGT GACGCGGATC
TCGCAGATCC TCGTGAACAT CCTCAACAAC GCGAGCAAAT ACACACCCGA AGACGGGAGC
ATTTCGATCA GCGCGCGAGC TGACGAGATG TGGGTCGAGA TCGTAACCAC CGACACGGGC
AGCGGAATAT CGGCCGAACT GTTGCCGAAG GTGTTCGAGC TCTTTTCACA GGGGGAACGC
ACGCTCGACC GTTCGAATGG CGGTCTCGGC ATCGGCCTTT CGCTCGTGAA GAAACTGGTC
GAACTGCATG ACGGCACGAT CGCCGTGGAG AGCGAAGGCG AAGGCCGCGG CACGACAGTC
ACGGTGTCGC TGCCGCGCCT GCATCATCAC GAACGACATT CGGCACTTGC GTTGTCGGAA
CCCGCCGCGA TCGACAAGCC GGTTTCGCTA AGGCTCCTGA TCGTCGACGA CAATCGCGAC
GCCGCAGACT CGCTCGCGAT GTTGTGTGAA TCGGAGGGCC ATTTTGCACG CACGGCCTAC
TCTTCGGCGG AGGCTATTGA AGCCGCTGCG CAGCTGCGCC CCGATGCAGC TCTGCTCGAC
ATCGGCTTGC CCGACATCGA TGGCTACGAA CTGGCGCGCC GGCTGCGCGC GAAGGACGAA
ACGTCGCCCC GCCTGATTGC AATCACCGGG TACGGACAAG CCGAAGACCG GCTCAGGGCC
CAGGCCGCCG GCTTCGACTA TCACTTCGTC AAGCCGGTCA ATATCAAGAG CCTGCTCAAA
CTGCTGTCCT CGCTGACGGG CGGCCGATGA
|
|---|
| Protein sequence | MHDPAHFLPS FVWRADRAGA VRYVNPWASR YLGLPAPHIV GRNWHEFVHP DDINPVLDAL
RQMHDGNLLR NVDVRLLRGD GVFHWHTLHL QAQRDESGRI GDTVGVATDI HHCRHAWAMY
EASERRLKAA CQGAGMGAWE WDMKSRHVRM TEQLAELYSF PSGTDAVTLT DLWNRVAPEQ
REPFQQEVAQ ALERGGPFEL DFQLDGTAAP PRWLRMRGHP EFDQQGVLSC VHGVTFDISR
QRAAEERLIL SERRYRALVE STGALVWSAH ADGEIRPADE PWGKFTGADP QRLENWGWLD
FVHPDDREMA REAWLTVLRD GTAGTITFRM RRYDGHYRMV QAHAAPLYDA HGTLQEWFGT
TTDVTAQHEA QAAIEARSLR LTVAMQAAEI HIVAVDLTSW TLSFEMGGEP RVGETLTYEA
ALSRIHPDDR PVLDGYVRQL ATGGDPGAHF EFRVLNPRGE QWMEGSALLQ RGADGKPLRL
IASVVDITER KRMELMLRET DRRKDEFLAM LAHELRNPLA PIRTAIALFE KHDGKDQRSA
DLIELMRRQT EHMTRIVDDL LEVSRITQGR IALQLEPILV GTAVYHAVEA MAASVEARRQ
HIQVDVSDAT AWVRGDVTRI SQILVNILNN ASKYTPEDGS ISISARADEM WVEIVTTDTG
SGISAELLPK VFELFSQGER TLDRSNGGLG IGLSLVKKLV ELHDGTIAVE SEGEGRGTTV
TVSLPRLHHH ERHSALALSE PAAIDKPVSL RLLIVDDNRD AADSLAMLCE SEGHFARTAY
SSAEAIEAAA QLRPDAALLD IGLPDIDGYE LARRLRAKDE TSPRLIAITG YGQAEDRLRA
QAAGFDYHFV KPVNIKSLLK LLSSLTGGR
|
|---|
| |