Gene Bphy_4940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_4940 
Symbol 
ID6246443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp2023867 
End bp2024634 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content61% 
IMG OID642596675 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001861082 
Protein GI186473740 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATCG CCAATCGGGT TTTTGTCATT ACTGGAGCGG GGTCGGGTCT CGGCGCCGCA 
GTAGCACGGA TGGTCGTGAA GCAGCAGGGT AAAGCAATGT TGCTGGACGT GAACGAAGAA
GCGATTGTCG CTCTGGCGCG CGAACTAGGG GGCGCGGCGC GCTTCCGGAG GGCCGACGTG
ACTAGCGAGG CGGATGGACA GGCCGCCATC GTGGCCACAG TCGACGCGTT CGGTCGCATT
GACGGTCTTG CAAATTGCGC AGGCGTCGCG CCCGGCGAGA AGGTGGTCGG ACGCGAGGGG
CCGCACAGTC TAACCAGCTT TGCTCGCGCG GTGTCGGTCA ATCTGGTGGG CACGTTCAAC
ATGATCCGGC TGGCAGCCGA CGCCATGTCG AAGCAGCAAG CCGATGAACA AGGCGAGCGC
GGCGTGATCG TCAACACTGC GTCTGTAGCC GCATTCGATG GACAGATAGG GCAGGCCGCG
TATGCTGCCT CCAAAAGCGG TGTGGTCGGG TTGACTCTAC CGGTGGCACG CGAACTTGCG
CGTTTTGGCA TCCGTGTGGT GACCATTGCG CCCGGTATCT TCGAGACACC GATGATGACG
GGGATGCCGC CTGAAGTGCT GGATTCGCTC GGAAAAAGTG TGCCGTTTCC ATCACGTCTA
GGGCGTCCGG ATGAATTCGC TGCGCTGGTG CGTCATATCG CCGAAAACAC AATGCTAAAC
GGCGAGGTGA TTCGTCTCGA CGGCGCTCTG CGGATGGCGC CGCGTTAA
 
Protein sequence
MDIANRVFVI TGAGSGLGAA VARMVVKQQG KAMLLDVNEE AIVALARELG GAARFRRADV 
TSEADGQAAI VATVDAFGRI DGLANCAGVA PGEKVVGREG PHSLTSFARA VSVNLVGTFN
MIRLAADAMS KQQADEQGER GVIVNTASVA AFDGQIGQAA YAASKSGVVG LTLPVARELA
RFGIRVVTIA PGIFETPMMT GMPPEVLDSL GKSVPFPSRL GRPDEFAALV RHIAENTMLN
GEVIRLDGAL RMAPR